Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,203,411 – 6,203,505 |
Length | 94 |
Max. P | 0.996090 |
Location | 6,203,411 – 6,203,505 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 80.37 |
Mean single sequence MFE | -27.53 |
Consensus MFE | -20.23 |
Energy contribution | -20.23 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.51 |
Structure conservation index | 0.73 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596700 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6203411 94 + 22224390 GUAAACCUG---GAAU-------UGAAUCAGGUG------UGUUGUGGGCGGUUCAUUGAACCGGCGGUUAAGUUGAAUUCAAUUAAAUGCCGGCAAACAUUUGUUUGUG ....(((((---(...-------....)))))).------.......(.((((((...)))))).)(((..(((((....)))))....))).((((((....)))))). ( -25.90) >DroEre_CAF1 9931 104 + 1 GUAAACCUGGGGGAAUCGUUGUGUGAUUCAGGUU------UGUUGUGGGCGGUUCAGUGAACCGGCAGUUAAGUUGAAUUCAAUUAAAUGCCGGCAAACAUUUGUUUGUC .(((((((....((((((.....)))))))))))------))........(((((...)))))((((....(((((....)))))...))))(((((((....))))))) ( -30.60) >DroYak_CAF1 9983 101 + 1 -UAAAU-----GCA---AUUGUGUGAGUCAGGUGAGUUAGUGUUGGGGGCGGUUCAGUGAACCGGCUGUUAAGUUGAAUUCAAUUAAAUGCCGGCAAACAUUUGUUUGUG -.....-----(((---(.(((.(((.((....)).))).((((((((.((((((...)))))).))(((.(((((....))))).))).)))))).))).))))..... ( -26.10) >consensus GUAAACCUG__GGAAU__UUGUGUGAAUCAGGUG______UGUUGUGGGCGGUUCAGUGAACCGGCAGUUAAGUUGAAUUCAAUUAAAUGCCGGCAAACAUUUGUUUGUG ..............................(((..............(.((((((...)))))).).(((.(((((....))))).)))))).((((((....)))))). (-20.23 = -20.23 + -0.00)
Location | 6,203,411 – 6,203,505 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 80.37 |
Mean single sequence MFE | -20.10 |
Consensus MFE | -14.77 |
Energy contribution | -14.77 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.99 |
Structure conservation index | 0.73 |
SVM decision value | 2.65 |
SVM RNA-class probability | 0.996090 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6203411 94 - 22224390 CACAAACAAAUGUUUGCCGGCAUUUAAUUGAAUUCAACUUAACCGCCGGUUCAAUGAACCGCCCACAACA------CACCUGAUUCA-------AUUC---CAGGUUUAC ..(((((....)))))..(((..(((((((....))).))))..)))(((((...)))))..........------.(((((.....-------....---))))).... ( -19.50) >DroEre_CAF1 9931 104 - 1 GACAAACAAAUGUUUGCCGGCAUUUAAUUGAAUUCAACUUAACUGCCGGUUCACUGAACCGCCCACAACA------AACCUGAAUCACACAACGAUUCCCCCAGGUUUAC (.(((((....))))).)((((.(((((((....))).)))).))))(((((...))))).........(------((((((((((.......)))))....)))))).. ( -25.90) >DroYak_CAF1 9983 101 - 1 CACAAACAAAUGUUUGCCGGCAUUUAAUUGAAUUCAACUUAACAGCCGGUUCACUGAACCGCCCCCAACACUAACUCACCUGACUCACACAAU---UGC-----AUUUA- .......(((((((((..(((..(((((((....))).))))..)))(((((...))))).............................))).---.))-----)))).- ( -14.90) >consensus CACAAACAAAUGUUUGCCGGCAUUUAAUUGAAUUCAACUUAACAGCCGGUUCACUGAACCGCCCACAACA______CACCUGAAUCACACAA__AUUCC__CAGGUUUAC ..(((((....)))))..(((..(((((((....))).))))..)))(((((...))))).................................................. (-14.77 = -14.77 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:45 2006