Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,194,633 – 6,194,736 |
Length | 103 |
Max. P | 0.506855 |
Location | 6,194,633 – 6,194,736 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 89.36 |
Mean single sequence MFE | -35.50 |
Consensus MFE | -25.20 |
Energy contribution | -24.96 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.10 |
Mean z-score | -1.73 |
Structure conservation index | 0.71 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506855 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6194633 103 - 22224390 AAACCGGGGGCGUUGCCGUCCAGCUGCAA-UAUAGCCCACGGGCAGUGCUCAAAAAUGGCCAAA-UUAGAUGG--AUUUGGUGGCACCAACAGCGGGGAAUCCCAGU .....((((((...))).(((.((((...-....(((....))).(((((........((((((-((.....)--))))))))))))...))))..)))..)))... ( -35.90) >DroSec_CAF1 1964 101 - 1 AA--CGGGGGCGUUGCCGUCCAGCUGCAA-AACAGCCCAUGGGCAGUGCUCAAAAAUGGCCAAA-UUAGAUGG--AUUUGGUGGCCCCAACAGCGGGGAAUCCCAGU ..--.((((((((((((.....((((...-..)))).....)))))))))).....(.((((((-((.....)--))))))).)((((......))))....))... ( -35.80) >DroSim_CAF1 2333 102 - 1 AA--CGGGGGCGUUGCCGUCCAGCUGCAAAAACAGCCCACGGGCAGUGCUCAAAAAUGGCCAAA-UUAGAUGG--AUUUGGUGGCCCCAACAGCGGGGAAUCCCAUU ..--.((((((((((((((...((((......))))..)).)))))))))).....(.((((((-((.....)--))))))).)((((......))))....))... ( -36.30) >DroEre_CAF1 1966 102 - 1 AA--CGGGGGCGUUGCCGUCCAGCUGCAA-AACAGGCCACGAGCAGUGCUCAAAAAUGGCCAAAAAAUCAUGG--AUUUAGUGGUCCAAGCAGCGGGGAAUCCCAGU ..--.((((((...))).(((.(((((..-....(((((.((((...)))).....))))).........(((--(((....)))))).)))))..)))..)))... ( -39.20) >DroYak_CAF1 1967 101 - 1 AU--CGGGGGCGUUGCCGUCCAACUGCAA--ACAGCCCAUGAGCAGUGCUCAAAAAUGGCCAAA-UAUGAUGGAGAUUUGGUGGUCCAA-CAGCGGGGAAUCCCAGU ..--.((((((.((((.(.....).))))--...)))).(((((...)))))...((.((((((-(.........))))))).))))..-....(((....)))... ( -30.30) >consensus AA__CGGGGGCGUUGCCGUCCAGCUGCAA_AACAGCCCACGGGCAGUGCUCAAAAAUGGCCAAA_UUAGAUGG__AUUUGGUGGCCCCAACAGCGGGGAAUCCCAGU .....((((...((.((((...((((......))))((((((((...))))..((((..(((........)))..)))).))))........)))).)).))))... (-25.20 = -24.96 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:43 2006