Locus 229

Sequence ID X_DroMel_CAF1
Location 792,701 – 792,803
Length 102
Max. P 0.999955
window344

overview

Window 4

Location 792,701 – 792,803
Length 102
Sequences 3
Columns 103
Reading direction reverse
Mean pairwise identity 67.53
Mean single sequence MFE -41.43
Consensus MFE -28.61
Energy contribution -28.51
Covariance contribution -0.10
Combinations/Pair 1.19
Mean z-score -2.14
Structure conservation index 0.69
SVM decision value 4.84
SVM RNA-class probability 0.999955
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 792701 102 - 22224390
GGGAACCUGUGCACACAGCUGCCGAAUGGUGUCGUGCUCGGGCGAAUA-CCCUUUGAGCGCCUCCUGGCGCUCCGAGGAGUGACUACUUUGGUCAAGAUGCUC
.....((((.(((((((.(........).))).)))).))))......-.((((.(((((((....))))))).))))..(((((.....)))))........ ( -40.30)
>DroSec_CAF1 4872 78 - 1
GGAAACCUGUGCACACUGCUCCCUAUUGGUGUCGUGCUCGGGCAAAUC-CCCUUUGAGCGCCUCCUGGCGCUCCGAGGA------------------------
(((..((((.((((...((.((.....)).)).)))).))))....))-)((((.(((((((....))))))).)))).------------------------ ( -35.90)
>DroEre_CAF1 1389 103 - 1
GGGAACCCGGGCGCACAGCUACCAGAUGCGGUCGCGUCAGGGGAAGUCCCACUUUGGGCGCCUCCUGGCGCUGCGAGGAGUAGCUACUGUGCUCAAGAUGCUC
((....))(((((((.((((((..(((((....)))))..(((....))).(((((((((((....)))))).))))).))))))..)))))))......... ( -48.10)
>consensus
GGGAACCUGUGCACACAGCUACCAAAUGGUGUCGUGCUCGGGCAAAUC_CCCUUUGAGCGCCUCCUGGCGCUCCGAGGAGU__CUACU_UG_UCAAGAUGCUC
.....((((.((((((..............)).)))).))))........((((.(((((((....))))))).))))......................... (-28.61 = -28.51 +  -0.10) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:27 2006