Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 792,701 – 792,803 |
Length | 102 |
Max. P | 0.999955 |
Location | 792,701 – 792,803 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 67.53 |
Mean single sequence MFE | -41.43 |
Consensus MFE | -28.61 |
Energy contribution | -28.51 |
Covariance contribution | -0.10 |
Combinations/Pair | 1.19 |
Mean z-score | -2.14 |
Structure conservation index | 0.69 |
SVM decision value | 4.84 |
SVM RNA-class probability | 0.999955 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 792701 102 - 22224390 GGGAACCUGUGCACACAGCUGCCGAAUGGUGUCGUGCUCGGGCGAAUA-CCCUUUGAGCGCCUCCUGGCGCUCCGAGGAGUGACUACUUUGGUCAAGAUGCUC .....((((.(((((((.(........).))).)))).))))......-.((((.(((((((....))))))).))))..(((((.....)))))........ ( -40.30) >DroSec_CAF1 4872 78 - 1 GGAAACCUGUGCACACUGCUCCCUAUUGGUGUCGUGCUCGGGCAAAUC-CCCUUUGAGCGCCUCCUGGCGCUCCGAGGA------------------------ (((..((((.((((...((.((.....)).)).)))).))))....))-)((((.(((((((....))))))).)))).------------------------ ( -35.90) >DroEre_CAF1 1389 103 - 1 GGGAACCCGGGCGCACAGCUACCAGAUGCGGUCGCGUCAGGGGAAGUCCCACUUUGGGCGCCUCCUGGCGCUGCGAGGAGUAGCUACUGUGCUCAAGAUGCUC ((....))(((((((.((((((..(((((....)))))..(((....))).(((((((((((....)))))).))))).))))))..)))))))......... ( -48.10) >consensus GGGAACCUGUGCACACAGCUACCAAAUGGUGUCGUGCUCGGGCAAAUC_CCCUUUGAGCGCCUCCUGGCGCUCCGAGGAGU__CUACU_UG_UCAAGAUGCUC .....((((.((((((..............)).)))).))))........((((.(((((((....))))))).))))......................... (-28.61 = -28.51 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:27 2006