Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,190,359 – 6,190,454 |
Length | 95 |
Max. P | 0.866523 |
Location | 6,190,359 – 6,190,454 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 64.94 |
Mean single sequence MFE | -21.70 |
Consensus MFE | -9.60 |
Energy contribution | -10.54 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.17 |
Mean z-score | -2.04 |
Structure conservation index | 0.44 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.866523 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6190359 95 - 22224390 ---------AAAUGCAAAGUAGCCAAAUGCAAGUAGUAGUUACUGGAAAAUUCCGAACAAUUGGA------------UAAAUGAAAUGCGAUAGUAUUUUGGUGGCAUUAAUG---AUA ---------.(((((..((((((....(((.....))))))))).......(((((....)))))------------.....(((((((....)))))))....)))))....---... ( -17.30) >DroSec_CAF1 16695 106 - 1 CUUUUUCUUAAAUGAAAAGCAGCCAAAUGCUAGUAGUAGUUACUGGAAAAACCCUGAAAUUUGGU------------UAAAUGAAAUGCGAUAGUAUUUUGGUGGCAUUAAUG-UAGUA ..(((((......)))))((((((((((.(((((((...)))))))............)))))))------------)....(((((((....)))))))....)).......-..... ( -20.02) >DroEre_CAF1 16993 98 - 1 ------AUUAAAUGCAAAGCAGCAAAAUGCUAGCAGUAAUUUCUGGAAAAUUCCAGACAUUUGGAAAUGCUGAAAUUAAAAUGAAAUGCCAUAGUAUUUUGGUG--------------- ------.............((.(((((((((((((......((((((....))))))(((((...(((......))).)))))...)))..)))))))))).))--------------- ( -23.10) >DroYak_CAF1 18626 99 - 1 --------------------GGCUAAGUGCUAGCAGAAAUUUCUGGAAAAUUCCGGACAUUUAGAAAUGCUGAAACUAAAAUGAAAUUAUAUAGUAUUUUGGUGGCAUUAAUGGCAGUA --------------------.((((((((((((((.((((.((((((....)))))).)))).....))))...(((((((((...........)))))))))))))))..)))).... ( -26.40) >consensus _________AAAUGCAAAGCAGCCAAAUGCUAGCAGUAAUUACUGGAAAAUUCCGGACAUUUGGA____________AAAAUGAAAUGCGAUAGUAUUUUGGUGGCAUUAAUG___GUA .....................(((((((((((...(((....((((......)))).(((((................)))))...)))..))))).))))))................ ( -9.60 = -10.54 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:42 2006