| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,186,050 – 6,186,142 |
| Length | 92 |
| Max. P | 0.786138 |
| Location | 6,186,050 – 6,186,142 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 75.63 |
| Mean single sequence MFE | -22.57 |
| Consensus MFE | -13.19 |
| Energy contribution | -13.75 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.786138 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6186050 92 - 22224390 UAUUUAGAAAGGGGUGCUAAGUGGAAU-GG-GGAACCUAUGCGUAUUAGUAAUCACUCAUACGCAGUGUUGCCAAACAUUUUUUAUAAUCAGUU .............(((..(((((....-.(-(.(((...(((((((.(((....))).)))))))..))).))...)))))..)))........ ( -20.60) >DroSec_CAF1 12331 81 - 1 UAUUUAGAAAGGAGUGCUAAAAGGAAU-GACGGAACCUAUGCGUAUUAGUAAUCACUCAUACGCAGUGUUGCCAAC-----------UUCAGU- ..........(((((.......(....-..)(((((...(((((((.(((....))).)))))))..))).)).))-----------)))...- ( -18.70) >DroEre_CAF1 12529 93 - 1 UCUAUAGAAAGAAGAGCUAUACGGAAUUGG-GGAACAUGGGCGUAUUAGUAAUCACUUAUACGCAGUGUUGCCAUUAAUUUUGUAUAAUCCGUU .............((..(((((((((((((-(.(((((..((((((.(((....))).)))))).))))).))..)))))))))))).)).... ( -28.30) >DroYak_CAF1 14112 92 - 1 UAUUGGGGAAGGAAAUCUAUGAAGAAU-GG-GGAACAUGUGCGUAUUAGUAAUCACUCAUACGCAGUGUUGCUAUACUGUUUUCAAAAUCAGUU ..(((..((.((...(((....)))..-.(-(.(((((.(((((((.(((....))).)))))))))))).))...)).))..)))........ ( -22.70) >consensus UAUUUAGAAAGGAGAGCUAAAAGGAAU_GG_GGAACAUAUGCGUAUUAGUAAUCACUCAUACGCAGUGUUGCCAAACAUUUUUUAUAAUCAGUU ...............................(((((((.(((((((.(((....))).)))))))))))).))..................... (-13.19 = -13.75 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:40 2006