Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,184,128 – 6,184,264 |
Length | 136 |
Max. P | 0.921868 |
Location | 6,184,128 – 6,184,227 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 91.09 |
Mean single sequence MFE | -35.90 |
Consensus MFE | -26.58 |
Energy contribution | -27.26 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.21 |
Mean z-score | -1.93 |
Structure conservation index | 0.74 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.700997 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6184128 99 + 22224390 GUUGCAGGGGGUGUGGCCGGUGGCAAAGGGCACAGCUUUCGCUCUGCUCAUCGAUUAAACAACGCGAAUGAGCAGGGCGAGGAGAAGGACGCGAAAAGG .((((...((.((((.((.........)).)))).))((((((((((((((((...........)).)))))))))))))).........))))..... ( -38.60) >DroSec_CAF1 10408 99 + 1 GUUGCAGGGGGUGUGGCCGGAGGCAAAGGGCACAGCUUUCGCUCUGCUCAUCGAUUAAACAACGCGAAUGAGCAGGGCGAGGAAAAGGACGCGAAAAGG .((((...((.((((.((.........)).)))).))((((((((((((((((...........)).)))))))))))))).........))))..... ( -38.60) >DroSim_CAF1 11500 99 + 1 GUUGCAGGGGGUGUGGCCGGAGGCAAAGGGCACAGCUUUCGCUCUGCUCAUCGAUUAAACAACGCGAAUGAGCAGGGCGAGGAGAAGGACGCGAAAAGG .((((...((.((((.((.........)).)))).))((((((((((((((((...........)).)))))))))))))).........))))..... ( -38.60) >DroEre_CAF1 10602 97 + 1 GCUUCAGGGGGCGUGGCCGGUGGCAAAGGGCGCAGCUUUCGCUCUGCUCAUCGAUUAAACAACGCGAAUGG--CGGACGAGGAGAAGGACGCAAAUAGG (((((.(..((((((.((.........)).))).)))..)..(((.(((.(((......)..(((.....)--)))).))).))).))).))....... ( -28.20) >DroYak_CAF1 12226 97 + 1 GCUUCGGGGGGCGUGGCCGGUGGCAAAGGGCACAUCUUUCGCUCUGCUCAUCGAUUAAACAACGCGAAUGG--CGGGUGAGCAGAAGGACGCAAAUAGG ((((((..((..(((.((.........)).)))..))..)..(((((((((((......)..(((.....)--)))))))))))).))).))....... ( -35.50) >consensus GUUGCAGGGGGUGUGGCCGGUGGCAAAGGGCACAGCUUUCGCUCUGCUCAUCGAUUAAACAACGCGAAUGAGCAGGGCGAGGAGAAGGACGCGAAAAGG ((....(..((((((.((.........)).))).)))..)(((((((((((((...........)).)))))))))))............))....... (-26.58 = -27.26 + 0.68)
Location | 6,184,154 – 6,184,264 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 93.44 |
Mean single sequence MFE | -36.07 |
Consensus MFE | -30.66 |
Energy contribution | -31.46 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.13 |
Mean z-score | -1.65 |
Structure conservation index | 0.85 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.921868 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6184154 110 + 22224390 AGGGCACAGCUUUCGCUCUGCUCAUCGAUUAAACAACGCGAAUGAGCAGGGCGAGGAGAAGGACGCGAAAAGGACCCGUUAUCCUGACCUAGUCAAAGUUCGCCUCUCUC .((((......((((((((((((((((...........)).))))))))))))))(((...(((......((((.......))))......)))....)))))))..... ( -38.90) >DroSec_CAF1 10434 110 + 1 AGGGCACAGCUUUCGCUCUGCUCAUCGAUUAAACAACGCGAAUGAGCAGGGCGAGGAAAAGGACGCGAAAAGGACCCGUUAUCCUGACCUAGUCAAAGUUCGCCUCUCUC .((((......((((((((((((((((...........)).))))))))))))))(((...(((......((((.......))))......)))....)))))))..... ( -39.20) >DroSim_CAF1 11526 110 + 1 AGGGCACAGCUUUCGCUCUGCUCAUCGAUUAAACAACGCGAAUGAGCAGGGCGAGGAGAAGGACGCGAAAAGGACCCGUUAUCCUGACCUAGUCAAAGUUCGCCUCUCUC .((((......((((((((((((((((...........)).))))))))))))))(((...(((......((((.......))))......)))....)))))))..... ( -38.90) >DroEre_CAF1 10628 108 + 1 AGGGCGCAGCUUUCGCUCUGCUCAUCGAUUAAACAACGCGAAUGG--CGGACGAGGAGAAGGACGCAAAUAGGGCCCAUUAUCCUGACCUAGUCAAAGUUCGCCUCUCUC .(((((.(((....))).)))))................((..((--(((((.((((...((.(.(.....).).))....))))(((...)))...)))))))..)).. ( -31.40) >DroYak_CAF1 12252 108 + 1 AGGGCACAUCUUUCGCUCUGCUCAUCGAUUAAACAACGCGAAUGG--CGGGUGAGCAGAAGGACGCAAAUAGGGCCCAUUAUCCUGACCUAGUCAAAGUUCGCCUCUCUC .((((...........(((((((((((......)..(((.....)--)))))))))))).((((.....((((..............))))......))))))))..... ( -31.94) >consensus AGGGCACAGCUUUCGCUCUGCUCAUCGAUUAAACAACGCGAAUGAGCAGGGCGAGGAGAAGGACGCGAAAAGGACCCGUUAUCCUGACCUAGUCAAAGUUCGCCUCUCUC .((((......((((((((((((((((...........)).))))))))))))))(((...(((......((((.......))))......)))....)))))))..... (-30.66 = -31.46 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:38 2006