Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,179,253 – 6,179,345 |
Length | 92 |
Max. P | 0.514095 |
Location | 6,179,253 – 6,179,345 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 81.52 |
Mean single sequence MFE | -18.31 |
Consensus MFE | -11.77 |
Energy contribution | -13.65 |
Covariance contribution | 1.88 |
Combinations/Pair | 1.17 |
Mean z-score | -1.63 |
Structure conservation index | 0.64 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514095 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6179253 92 - 22224390 UAUUUAAUCAAGUGCAACUGUGUUUGCAUUGCACUAUUGUCAUUGAUAUUAGGUUUAUGUACACUUAUGUACAUUCAAUUAAGUUGCGAUUG ....(((((.(((((((.(((....)))))))))).............((((....(((((((....)))))))....)))).....))))) ( -19.80) >DroSec_CAF1 7887 78 - 1 UAUUUAAUCAAGUGCAACUGUGUUUGCAUUGCACUAUUGCCAUUGAUAUUGGGUUUAUGUACACUUAUGUGCAUUCAA-------------- ......(((((..((((..((((.......))))..))))..))))).........(((((((....)))))))....-------------- ( -17.70) >DroSim_CAF1 8784 92 - 1 UAUUUAAUCAAGUGCAACUGUGUUUGCAUUGCACUAUUGCCAUUGAUAUUAGGCUUAUGUACACUUAUGUGCAUUCAACUAAGUUGCGAUUG ....(((((.(((((((.(((....)))))))))).............((((....(((((((....)))))))....)))).....))))) ( -22.00) >DroEre_CAF1 8106 88 - 1 UAUGUAAUCAAGUGCAACUGUAUUUGCACUAAACUUUUGCCGUUGUUAUUAGUUUUAUUUAUACUUA----CAUUCAAUUAAGUUGGGAUUG ....(((((.(((((((......))))))).(((((.......(((....(((.........))).)----)).......)))))..))))) ( -13.74) >consensus UAUUUAAUCAAGUGCAACUGUGUUUGCAUUGCACUAUUGCCAUUGAUAUUAGGUUUAUGUACACUUAUGUGCAUUCAAUUAAGUUGCGAUUG ......(((((..((((..((((.......))))..))))..))))).((((....((((((......))))))....)))).......... (-11.77 = -13.65 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:36 2006