Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,165,788 – 6,165,914 |
Length | 126 |
Max. P | 0.999674 |
Location | 6,165,788 – 6,165,887 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 86.70 |
Mean single sequence MFE | -26.54 |
Consensus MFE | -22.74 |
Energy contribution | -23.14 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.85 |
Structure conservation index | 0.86 |
SVM decision value | 1.12 |
SVM RNA-class probability | 0.917724 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6165788 99 + 22224390 CCGGCGGCAUAGAAGCACCCAGCAUAGCCAAUGCAUCCGCAACCUCAACUGCAUCCGCAUCCGCAUUAGCAAAUGCAAGUACAGCCGCCUCCGCAUCCG- ..((((((...((.((.....((((.....))))....(((........)))....)).)).(((((....))))).......))))))..........- ( -27.90) >DroSec_CAF1 4399 87 + 1 CCGGCGGCAUAGAAGCACCCAGCAUAGCCAAUGCAUCCGC------------AUCUGCAUCCGCAUUAGCAAAUGCAAGUACAGCCGCCUCCGCAUCCG- ..((((((..(((.((.....((((.....))))....))------------.)))((((..((....))..)))).......))))))..........- ( -26.10) >DroSim_CAF1 6715 87 + 1 CCGGCGGCAUAGAAGCACCCAGCAUAGCCAAUGCAUCCGC------------AUCUGCAUCCGCAUUAGCAAAUGCAAGUACAGCCGCCUCCGCAUCCG- ..((((((..(((.((.....((((.....))))....))------------.)))((((..((....))..)))).......))))))..........- ( -26.10) >DroEre_CAF1 4263 81 + 1 CCGGCGGCAUUGAAGCACCUAGCAUAGCCGCUGCAUCC------------------GCAUCCGCAUUGGCAAAUGCAAGUACAGCCGCCUCCGCAUCCG- ..((((((......((.....))...((((.(((....------------------......))).)))).............))))))..........- ( -24.60) >DroYak_CAF1 10055 94 + 1 CCGGCGGCAUUGAAGCACCCAGCAUAGCCACUGCAUCUGCAUCC------GCAUCCGCAUCUGCAUUAGCAAAUGCAAGUACAGCCGCCUCCGCAUCCGC ..((((((......((.....))...((...(((....)))...------))....((((.(((....))).)))).......))))))........... ( -28.00) >consensus CCGGCGGCAUAGAAGCACCCAGCAUAGCCAAUGCAUCCGC____________AUCCGCAUCCGCAUUAGCAAAUGCAAGUACAGCCGCCUCCGCAUCCG_ ..((((((.............((((.....))))......................((((..((....))..)))).......))))))........... (-22.74 = -23.14 + 0.40)
Location | 6,165,788 – 6,165,887 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 86.70 |
Mean single sequence MFE | -40.42 |
Consensus MFE | -36.95 |
Energy contribution | -37.31 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.14 |
Mean z-score | -2.96 |
Structure conservation index | 0.91 |
SVM decision value | 3.87 |
SVM RNA-class probability | 0.999674 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6165788 99 - 22224390 -CGGAUGCGGAGGCGGCUGUACUUGCAUUUGCUAAUGCGGAUGCGGAUGCAGUUGAGGUUGCGGAUGCAUUGGCUAUGCUGGGUGCUUCUAUGCCGCCGG -..........((((((.((((((((((..(((((((((..(((((...(....)...)))))..))))))))).)))).))))))......)))))).. ( -42.40) >DroSec_CAF1 4399 87 - 1 -CGGAUGCGGAGGCGGCUGUACUUGCAUUUGCUAAUGCGGAUGCAGAU------------GCGGAUGCAUUGGCUAUGCUGGGUGCUUCUAUGCCGCCGG -..........((((((.((((((((((..(((((((((..(((....------------)))..))))))))).)))).))))))......)))))).. ( -41.00) >DroSim_CAF1 6715 87 - 1 -CGGAUGCGGAGGCGGCUGUACUUGCAUUUGCUAAUGCGGAUGCAGAU------------GCGGAUGCAUUGGCUAUGCUGGGUGCUUCUAUGCCGCCGG -..........((((((.((((((((((..(((((((((..(((....------------)))..))))))))).)))).))))))......)))))).. ( -41.00) >DroEre_CAF1 4263 81 - 1 -CGGAUGCGGAGGCGGCUGUACUUGCAUUUGCCAAUGCGGAUGC------------------GGAUGCAGCGGCUAUGCUAGGUGCUUCAAUGCCGCCGG -(((..(((..(((.((((((..(((((((((....))))))))------------------)..)))))).))).)))..(((........))).))). ( -36.70) >DroYak_CAF1 10055 94 - 1 GCGGAUGCGGAGGCGGCUGUACUUGCAUUUGCUAAUGCAGAUGCGGAUGC------GGAUGCAGAUGCAGUGGCUAUGCUGGGUGCUUCAAUGCCGCCGG .(((..(((..(((.((((((.((((((((((...(((....)))...))------)))))))).)))))).))).)))..(((........))).))). ( -41.00) >consensus _CGGAUGCGGAGGCGGCUGUACUUGCAUUUGCUAAUGCGGAUGCAGAU____________GCGGAUGCAUUGGCUAUGCUGGGUGCUUCUAUGCCGCCGG ...........((((((.((((((((((..(((((((((..(((................)))..))))))))).)))).))))))......)))))).. (-36.95 = -37.31 + 0.36)
Location | 6,165,812 – 6,165,914 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 83.83 |
Mean single sequence MFE | -35.26 |
Consensus MFE | -25.30 |
Energy contribution | -25.62 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.12 |
Mean z-score | -2.20 |
Structure conservation index | 0.72 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.896385 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6165812 102 - 22224390 ACGACGAUGAGGAGGAGGCGGAUGCUG---------CGGAUGCGGAGGCGGCUGUACUUGCAUUUGCUAAUGCGGAUGCGGAUGCAGUUGAGGUUGCGGAUGCAUUGGCUA .(..(.....)..)..(((.(((((..---------....(((((...((((((((..(((((((((....)))))))))..))))))))...)))))...))))).))). ( -40.40) >DroSec_CAF1 4423 90 - 1 ACGACGAGGAGGAGGAGGCGGAUGCUG---------CGGAUGCGGAGGCGGCUGUACUUGCAUUUGCUAAUGCGGAUGCAGAU------------GCGGAUGCAUUGGCUA .(..(.....)..)..(((.(((.(((---------(....))))..(((.(((((.((((((((((....)))))))))).)------------)))).)))))).))). ( -32.10) >DroSim_CAF1 6739 90 - 1 ACGACGAGGAGGAGGAGGCGGAUGCUG---------CGGAUGCGGAGGCGGCUGUACUUGCAUUUGCUAAUGCGGAUGCAGAU------------GCGGAUGCAUUGGCUA .(..(.....)..)..(((.(((.(((---------(....))))..(((.(((((.((((((((((....)))))))))).)------------)))).)))))).))). ( -32.10) >DroEre_CAF1 4287 84 - 1 ACGACGAGGAUGAGGAGGCGGAUGCUG---------CGGAUGCGGAGGCGGCUGUACUUGCAUUUGCCAAUGCGGAUGC------------------GGAUGCAGCGGCUA .(..((....((....(((....))).---------))....))..)((.((((((..(((((((((....))))))))------------------)..)))))).)).. ( -31.50) >DroYak_CAF1 10079 105 - 1 ACGACGACGAGGAGGAGGCAGAUGCUGCGGAUGUUGCGGAUGCGGAGGCGGCUGUACUUGCAUUUGCUAAUGCAGAUGCGGAUGC------GGAUGCAGAUGCAGUGGCUA .(..(.....)..)...(((..(((.((....)).)))..)))...(((.((((((.((((((((((...(((....)))...))------)))))))).)))))).))). ( -40.20) >consensus ACGACGAGGAGGAGGAGGCGGAUGCUG_________CGGAUGCGGAGGCGGCUGUACUUGCAUUUGCUAAUGCGGAUGCAGAU____________GCGGAUGCAUUGGCUA ................(((.(((((...........(((.(((....))).)))...((((((((((....))))))))))....................))))).))). (-25.30 = -25.62 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:34 2006