Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 791,236 – 791,344 |
Length | 108 |
Max. P | 0.551830 |
Location | 791,236 – 791,344 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 95.76 |
Mean single sequence MFE | -41.87 |
Consensus MFE | -41.50 |
Energy contribution | -41.83 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.37 |
Structure conservation index | 0.99 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.551830 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 791236 108 - 22224390 --GGAGUUAGUGGCGGCCAACAGGGCAGCUAAGUUGUGGCGUGCGACUUACGCUCCAUUGGAAGUACGUCGAUGGAUCGAUGUAGGCCCAGUGCGUCUUUAUCCAGGCAC --(((......(((((((.....)))(((((((((((.....)))))))).))).((((((...((((((((....))))))))...))))))))))....)))...... ( -38.30) >DroSec_CAF1 3415 110 - 1 GCGGAGUUAGAGGCGGCCAAUAGGGCAGCUAAGUUGUGGCGUGCGACUUACGCUCCAUUGGAAGUACGUCGAGGGAUCGAUGUAGGCCCAGUGCGUCUUUAUCCAGGCAC (((((..(((((((((((.....)))(((((((((((.....)))))))).))).((((((...((((((((....))))))))...)))))))))))))))))..)).. ( -43.60) >DroSim_CAF1 6978 110 - 1 GCGGAGUUAGAGGCGGCCAAUGAGGCAGCUAAGUUGUGGCGUGCGACUUACGCUCCAUUGGAAGUACGUCGAGGGAUCGAUGUAGGCCCAGUGCGUCUUUAUCCAGGCAC (((((..(((((((((((.....)))(((((((((((.....)))))))).))).((((((...((((((((....))))))))...)))))))))))))))))..)).. ( -43.70) >consensus GCGGAGUUAGAGGCGGCCAAUAGGGCAGCUAAGUUGUGGCGUGCGACUUACGCUCCAUUGGAAGUACGUCGAGGGAUCGAUGUAGGCCCAGUGCGUCUUUAUCCAGGCAC ..(((..(((((((((((.....)))(((((((((((.....)))))))).))).((((((...((((((((....))))))))...)))))))))))))))))...... (-41.50 = -41.83 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:26 2006