Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,162,484 – 6,162,598 |
Length | 114 |
Max. P | 0.647853 |
Location | 6,162,484 – 6,162,598 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 86.54 |
Mean single sequence MFE | -33.27 |
Consensus MFE | -23.41 |
Energy contribution | -23.89 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.19 |
Mean z-score | -1.86 |
Structure conservation index | 0.70 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.647853 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6162484 114 + 22224390 CCCUCUUCCGUU-AAUUUCCCGAGAAGCUUUCGAAGCGAAUUGAAGCGAGAGAGUGAGUGAGAGAGGAAGUGGGGUAGAGUGGUGCAAAGAAAUAGCGGAAAAGCGAAGACGGCG (((.(((((...-..((((.(.....((((((...((........))..))))))..).))))..))))).))).....((.((....(....).((......))....)).)). ( -28.80) >DroSec_CAF1 1147 112 + 1 CCCUCUUCCGUU-CACUUCCCGAGAAGCUUUCGAAGCGAAUUGAAGCGAGAGCGUGAGUGAGAGAGGGAGUGGGGGAGAGUGGUGCAAAGAAAUAG--AAAAAGCGAAGACGGCG (((((((((..(-((((.(((......(((((...((........))....((....))))))).))))))))))))))).)).............--.....((.......)). ( -32.40) >DroSim_CAF1 3477 114 + 1 CCCUCUUCCGUU-CACUUCCCGAGAAGCUUUCGAAGCGAAUUGAAGCGCGAGAGUGAGUGAGAGAGGAAGUGGGGGAGAGUGGUGAAAAGAAAUAGCGGAAAAGCGAAGACGGCG (((((((((..(-((((((((.....(((((((..((........)).)))))))........).))))))))))))))).))............((......)).......... ( -35.72) >DroEre_CAF1 1169 114 + 1 CUCUCUCCCCAU-CACAUUCAGAGAAGCUUUCGAAGCGAAUUGAAGCGAGAGAGUAAGUGAAAGAGGGAGUGGGGGAGACUGGUGCAAAGAAACAGCGGAAAAGCGAAGACGGCG .((((.((((((-..(.((((.....((((((...((........))..))))))...))))....)..))))))))))(((.((........)).)))....((.......)). ( -31.50) >DroYak_CAF1 6977 105 + 1 CCCUCUUCCCAUCCACUUUCAGAGAAGCUUUCGAA----------ACGAGAGAGUAUGUGAGAGAGGGAGUGGGGGAGAGUGGUGCUAAGAAACAGCGGAAAAGCGAAGACGGCG ((((((((((.(((.((((((.(....((((((..----------.))))))....).))))))..)))...)))))))).)).(((........((......))......))). ( -37.94) >consensus CCCUCUUCCGUU_CACUUCCCGAGAAGCUUUCGAAGCGAAUUGAAGCGAGAGAGUGAGUGAGAGAGGGAGUGGGGGAGAGUGGUGCAAAGAAAUAGCGGAAAAGCGAAGACGGCG (((((((((....(((((((......((((((...((........))..))))))..........))))))).))))))).))....................((.......)). (-23.41 = -23.89 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:26 2006