Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,155,647 – 6,155,741 |
Length | 94 |
Max. P | 0.671170 |
Location | 6,155,647 – 6,155,741 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 76.82 |
Mean single sequence MFE | -20.15 |
Consensus MFE | -12.52 |
Energy contribution | -13.03 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.17 |
Mean z-score | -1.75 |
Structure conservation index | 0.62 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671170 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6155647 94 - 22224390 UGUACACUUUCAGGCAGUCGCAGGAAAAUGACUUCUUGAAAGGCAAA----------AGCCAAAAGCAA-----UAAUGUAAAAGAAACGAGAAUUCGAGUGGG---GGCAA (((.(((((((..((....))..)))).(((.((((((...(((...----------.)))....(((.-----...)))........)))))).))).)))..---.))). ( -21.50) >DroSec_CAF1 8743 93 - 1 UGCACGCUUUCAGGCAGUCGCAGGAAAAUGACUUCUUGAAAGGCAAA----------AGCCAAAAGCAA-----UAAUGUAAAAGAAACGAGAAUUCGAGUGG----GGCAA (((.(((((((..((....))..)))).(((.((((((...(((...----------.)))....(((.-----...)))........)))))).))).))).----.))). ( -22.80) >DroEre_CAF1 6540 93 - 1 UGCACACUUUCAGGCAGUCGCAGGAAAAUGACUUCUUGAAAGGCAAA----------AGCCAAAAGCAA-----UAAUGUGAAAGAAACGAGAAUUCGAGUGG----GGCAA (((.(((((((..((....))..)))).(((.((((((...(((...----------.)))....(((.-----...)))........)))))).))).))).----.))). ( -23.20) >DroWil_CAF1 5511 108 - 1 UGCAUACUUUGAGGCGGUGGCAUGAAAAUGACUUCUCGUAAGAGAAAGAGAGAGGAGAGAGAAAAGGAAAAUGAAAAUGAAAACGAAACGUAA--CCAAAUGAAAAUGGC-- .......((((..(((.((.(((....)))..(((((....))))).....................................))...)))..--.))))..........-- ( -13.10) >consensus UGCACACUUUCAGGCAGUCGCAGGAAAAUGACUUCUUGAAAGGCAAA__________AGCCAAAAGCAA_____UAAUGUAAAAGAAACGAGAAUUCGAGUGG____GGCAA ..(((.((((((((.(((((........))))).))))))))..............................................((......)).))).......... (-12.52 = -13.03 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:21 2006