Locus 227

Sequence ID X_DroMel_CAF1
Location 790,658 – 790,774
Length 116
Max. P 0.556979
window342

overview

Window 2

Location 790,658 – 790,774
Length 116
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 86.16
Mean single sequence MFE -47.06
Consensus MFE -32.94
Energy contribution -34.00
Covariance contribution 1.06
Combinations/Pair 1.11
Mean z-score -1.51
Structure conservation index 0.70
SVM decision value 0.05
SVM RNA-class probability 0.556979
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 790658 116 - 22224390
GGUUCACAAUUUUCACAUUCCG--GCCCACGU-UCUGCUGCAGAAAG-GGCGAUCCUGUGGGCAGUAUGGAGGAAGUGCCAGCCGAAUCUCCACCGCCUGGCUGCGGACUGUGGAUCAGG
(((((((..(((((.(((....--((((((.(-((((...)))))((-(.....)))))))))...))))))))(((.(((((((.............)))))).).))))))))))... ( -41.82)
>DroSec_CAF1 2837 116 - 1
GGUUCACAAUCUGGACAUUUCG--GCCCACGU-UCUGCUGCAGCAAG-GGCGAUCCUGUGGCCAGUGUGGAGGAAGUGCCAAUCGAAUCUCCACCGCCUGGCUGCGGACUGUGGAUCAGG
((((((((.((((((....(((--.(((..((-((....).)))..)-)))))))).(..(((((.((((.(((..(.........)..))).)))))))))..)))).))))))))... ( -46.10)
>DroSim_CAF1 6401 116 - 1
GGUUCACAAUCUGCACAUUUCG--GCCCACGU-UCUGCUGCAGCAAG-GGCGAUCCUGUGGCCAGUGUGGAGGAAGUGCCAAUCGAAUCUCCACCGCCUGGCUGCGGACUGUGGAUCAGG
((((((((.((((((((..(((--.(((..((-((....).)))..)-)))))...)))((((((.((((.(((..(.........)..))).))))))))))))))).))))))))... ( -48.00)
>DroYak_CAF1 539 117 - 1
GGUUCACAAUCUGCACANNNNNNNNNNCACGUUUCUGCUGCAGCAAGGGGCGAUCCUGUGGGCAGUGUGG---AAGGGCCAGCCGCCUCGCCACCGCCUGCAGGUGGACUGUGGAUCAGG
((((((((.((..(...............(((..((((....)).))..)))...(((..(((.(.((((---..((((.....))))..))))))))..))))..)).))))))))... ( -52.30)
>consensus
GGUUCACAAUCUGCACAUUUCG__GCCCACGU_UCUGCUGCAGCAAG_GGCGAUCCUGUGGCCAGUGUGGAGGAAGUGCCAACCGAAUCUCCACCGCCUGGCUGCGGACUGUGGAUCAGG
((((((((.(((((.............((((..((.(((.(.....).)))))...))))(((((.((((.(((.((.........)).))).))))))))).))))).))))))))... (-32.94 = -34.00 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:25 2006