Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,148,310 – 6,148,411 |
Length | 101 |
Max. P | 0.587606 |
Location | 6,148,310 – 6,148,411 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 81.49 |
Mean single sequence MFE | -22.28 |
Consensus MFE | -17.17 |
Energy contribution | -17.83 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.51 |
Structure conservation index | 0.77 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.587606 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6148310 101 - 22224390 UUCC-A--CGGUUUUUUACACUCGUUUUUUCUUCAGUUUUGCCUUUGUUUUUGUUUGGCUUUUAGCUUUAUCGCGACAUUGGCAAACAAUUUUCGGCAAGGCAA ....-(--((((.......)).)))..........((((((((.......(((((((.(.....((......))......).))))))).....)))))))).. ( -21.20) >DroEre_CAF1 3739 101 - 1 UUUUAACCCGAUCUU---AGCUCGCUGUUUCUGUUGUUAUGCCUUUGUUUUUGUUUGGCUUUUGGCUUUAUCGCGACAUUGGCAAACAAUUUUCGGCAAGGCAA ...............---.(((.((((.....((((((.((((..((((.(.((..(((.....)))..)).).))))..))))))))))...))))..))).. ( -26.10) >DroYak_CAF1 3798 93 - 1 UUGU-ACCCGGUCCC---AGCUCGUUGUUUCUUCGGUUUUGCCUUUGUUUUUGUUUG-------GCUUUAUCGCGACAUUGGCAAACAAUUUUCGGCAAGGCAA ....-..((((....---(((.....)))...))))..(((((((.(((.(((((((-------.(..............).))))))).....)))))))))) ( -19.54) >consensus UUCU_ACCCGGUCUU___AGCUCGUUGUUUCUUCAGUUUUGCCUUUGUUUUUGUUUGGCUUUU_GCUUUAUCGCGACAUUGGCAAACAAUUUUCGGCAAGGCAA ...................................((((((((.......(((((((.(.....((......))......).))))))).....)))))))).. (-17.17 = -17.83 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:14 2006