Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,138,180 – 6,138,285 |
Length | 105 |
Max. P | 0.890827 |
Location | 6,138,180 – 6,138,285 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 78.73 |
Mean single sequence MFE | -47.80 |
Consensus MFE | -20.16 |
Energy contribution | -20.58 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.45 |
Mean z-score | -2.80 |
Structure conservation index | 0.42 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890827 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6138180 105 - 22224390 AUGCACAGCCAGUUGGCGGGCACCUCGAAGCUGUCUGUGGGAUGCGGCGUGUACUGCGCGCAGUAGGGCACAUGCCAGGUGUCCGCCACUUGGUGGGCACACAGC .(((...(((((.((((((((((((....((.(((.....)))))(((((((.((((.....))))...))))))))))))))))))).)))))..)))...... ( -53.90) >DroVir_CAF1 1569 105 - 1 AGGCACAGCCAUUUUUCUGGCACCUCAAAGCUUUCCGACGGAUUUACCGUAUACACCUCACAGCAGGGCACAUGCCAAACGUUGCCCACUUUGUGGGCGCUCAAC .((((..((((......))))........((......((((.....)))).....(((......)))))...)))).......((((((...))))))....... ( -30.10) >DroSec_CAF1 954 105 - 1 AUGCACAGCCAGUUGGCGGGCACCUCGAAGCUGUCCGUGGGAUGCGGCGUGUACUGCGCGCAGUAGGGUACAUGCCAGGUGCCCGCCACUUGGUGGGCACACAGC .(((...(((((.((((((((((((....((.((((...))))))((((((((((((.....))..)))))))))))))))))))))).)))))..)))...... ( -59.00) >DroSim_CAF1 3561 105 - 1 AUGCACAGCCAGUUGGCGGGCACCUCGAAGCUGUCCGUGGGAUGCGGCGUGUACUGCGCGCAGUAGGGCACAUGCCAGGUGCCCGCCACUUGGUGGGCACACAGC .(((...(((((.((((((((((((....((.((((...))))))(((((((.((((.....))))...))))))))))))))))))).)))))..)))...... ( -58.00) >DroAna_CAF1 1575 105 - 1 AGGCACAGCCAGUUGGGGGGCACUUCAAAGCUGUCCGACGGAUGCGGGGUGUACACCUCGCAAUAGGGAACAUGCCAAGUGCCGGUGACUUUGUGUGCUACCAAU .(((((.....((((((.(((........))).))))))((.((((((((....))))))))...(....)...))..)))))((((.(.......).))))... ( -42.50) >DroMoj_CAF1 6364 105 - 1 AUGCACAGCCACUUCUCUGGCACCUCGAAGCUGUCUGGGGGAUUGGCGGUGUAUGCUUCGCAGUACGGCACAUGCCAGACAUUGCCCACCUUGUGGGCGCUCAGC ((((((.((((.(((((..(((.(.....).)).)..))))).)))).))))))(((..((.((..(((....)))..))...((((((...))))))))..))) ( -43.30) >consensus AUGCACAGCCAGUUGGCGGGCACCUCGAAGCUGUCCGUGGGAUGCGGCGUGUACUCCGCGCAGUAGGGCACAUGCCAGGUGCCCGCCACUUGGUGGGCACACAGC .(((.............((((((((....(((((..(..(.((((...)))).)..)..)))))..(((....))))))))))).((((...)))))))...... (-20.16 = -20.58 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:06 2006