Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,131,800 – 6,131,915 |
Length | 115 |
Max. P | 0.772470 |
Location | 6,131,800 – 6,131,915 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 89.86 |
Mean single sequence MFE | -25.18 |
Consensus MFE | -18.28 |
Energy contribution | -20.16 |
Covariance contribution | 1.88 |
Combinations/Pair | 1.06 |
Mean z-score | -2.14 |
Structure conservation index | 0.73 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.772470 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6131800 115 - 22224390 CCAAAUCUGGUGCCUACAUCAUCUAUGUAUCUGCCAGAGAAGCAAUCAUGCCGAAUUAGCAUAAUUUCUGUUUGUGUUCAUAACGAAUGCAAACAAACAAAAUGCUGCUGAUCCC .....(((((((..(((((.....)))))..)))))))...(((....))).(.(((((((..((((.(((((((((((.....)))))))))))....))))..))))))).). ( -30.60) >DroSec_CAF1 1998 111 - 1 CCAAAUCUGGUGACUACAUCAUCUAUGUAUCUGCCAGAGAAGCAAUCAUGCCGAAUUAGCAUAAUUUCUUGUUGUGUUCAUAACGAAUGCAAA----CAAAAUGCUGCUGAUCCC .....(((((((..(((((.....)))))..)))))))...(((....))).(.(((((((..((((....((((((((.....)))))))).----..))))..))))))).). ( -27.00) >DroSim_CAF1 4098 115 - 1 CCAAAUCUGGUGACUACAUCAUCUAUGUAUCUGCCAGAGAAGCAAUCAUGCCGAAUUAGCAUAAUUUCUUGUUGUGUUCAUAACGAAUGCAAACAAACAAAAUGCUGCUGAUCCC .....(((((((..(((((.....)))))..)))))))...(((....))).(.(((((((..((((.(((((((((((.....)))))).)))))...))))..))))))).). ( -27.30) >DroEre_CAF1 2017 108 - 1 CCAA-GCUGGUGACUACAUCAUCA----AUCUGCCAGAGAAGCAAUCAUGCCGAAUUAGCAUAAUUUCU--UUGUGUUCGUAAUGAAUGCAAACAAACAAUAUUCUGCUGAUCCA ...(-((((((((.....))))))----.............(((.((((..(((....((((((.....--)))))))))..)))).)))................)))...... ( -21.00) >DroYak_CAF1 1983 109 - 1 CCAAAUCUGGUGACUACAUCAUCU----AUCUGCCAGAGAAGCAAUCAUACCGAAUUAGCAUAAUUUCU--UUGUAUUCACAAUGUAUGCAAACAAACAAAAUGCUGCUGGUCCA ........(((((.....))))).----....(((((...((((.((.....))....(((((......--((((....))))..)))))............)))).)))))... ( -20.00) >consensus CCAAAUCUGGUGACUACAUCAUCUAUGUAUCUGCCAGAGAAGCAAUCAUGCCGAAUUAGCAUAAUUUCU__UUGUGUUCAUAACGAAUGCAAACAAACAAAAUGCUGCUGAUCCC .....(((((((..(((((.....)))))..)))))))..............(.(((((((..((((....((((((((.....)))))))).......))))..))))))).). (-18.28 = -20.16 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:05 2006