Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,125,061 – 6,125,169 |
Length | 108 |
Max. P | 0.811630 |
Location | 6,125,061 – 6,125,169 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 72.26 |
Mean single sequence MFE | -35.63 |
Consensus MFE | -15.35 |
Energy contribution | -15.73 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.33 |
Mean z-score | -2.38 |
Structure conservation index | 0.43 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.811630 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6125061 108 - 22224390 CAGACCCUUCCAUUCCUGGAACUUUCCAGAUGCAAUUGUAAUGCAUAU----------GUACAUAUGGAAAUAGCAUUGUACGCAUACUGGCUUAUGUGCGAGUGGGUUGGUGG-GAAA (..(((..((((((((((((....))))).............((((((----------(((((.(((.......))))))))((......))..)))))))))))))..)))..-)... ( -31.70) >DroSec_CAF1 26322 104 - 1 CAGCCCCUUCCAUUCCAGGAACUUUACAGAUGGAUUUA--GU---CAC----------AUACAAAUGUACAUAGCUGUGUACGCAUACUGGCUUAUGUGCUGGUGUGUUGGUGGGGAAA ...((((..(((.((((.............))))....--..---...----------........((((((....))))))((((((..((......))..))))))))).))))... ( -32.22) >DroEre_CAF1 23446 114 - 1 CAGCCUAGUCCAUUCCAGGAAGUUUCCAGAUGCAGUUA--GU---CACAAGUAUGUACAUAUGUAUGUAUGUAGAUGUGCCCGCACACUGGUUCAUGUGCGGGUGUGGGAGUGGAGAAA ........((((((((.(((....)))...........--..---(((...(((.(((((((....))))))).))).(((((((((........)))))))))))))))))))).... ( -41.70) >DroYak_CAF1 21131 112 - 1 CAGCCCAGUCCAUUCCAGGAACUUUCCAGAUGCAUUUA--GU---CACAAGUACA--UAUAUGUAUGUAAAUAGGUGUGCACGCACACUGUCUCUUGUGAGAGUGUGGAAGUGGGGAAA ...((((.(((......(((....)))....((((((.--.(---((((((((((--((....))))))....((((((....))))))....))))))))))))))))..)))).... ( -36.90) >consensus CAGCCCAGUCCAUUCCAGGAACUUUCCAGAUGCAUUUA__GU___CAC__________AUACAUAUGUAAAUAGCUGUGCACGCACACUGGCUCAUGUGCGAGUGUGGUAGUGGGGAAA ........(((......)))..((((((..............................((((.(((....))).)))).....((((((.((......)).))))))....)))))).. (-15.35 = -15.73 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:04 2006