Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,112,885 – 6,112,983 |
Length | 98 |
Max. P | 0.987336 |
Location | 6,112,885 – 6,112,983 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 81.94 |
Mean single sequence MFE | -25.56 |
Consensus MFE | -20.51 |
Energy contribution | -19.31 |
Covariance contribution | -1.20 |
Combinations/Pair | 1.33 |
Mean z-score | -2.54 |
Structure conservation index | 0.80 |
SVM decision value | 2.08 |
SVM RNA-class probability | 0.987336 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6112885 98 - 22224390 CAGUUUUCUACUGUUUACAGUACAGUUUGCUGUUAGCUUACAGCAGUGUUCUCGCUGCCAGCCCUGGUUUGCAUUGCAGAACUACAGUGGAUCCUUCC ......((((((((............(((((((......))))))).(((((.(((((.(((....))).)))..))))))).))))))))....... ( -29.80) >DroSec_CAF1 9432 89 - 1 CACUCCUUUACUGAUUACAGUUCUCUUGGCUGUUAGCUUACAGCAGU---------GCCAGCCCUGGUUUUCAUUGCAGAACUACAGUGGAUUCUUCC ......(((((((.....((((((...(((.....)))....(((((---------(..(((....)))..)))))))))))).)))))))....... ( -21.10) >DroSim_CAF1 9035 89 - 1 CACUCUUUUACUGAUUACAGUUCACUUGGCUGUUAGCUUACAGCAGU---------GCCAGCCCUGGUUUUUAUUGCAGAACUACAGUGGAUUCUUCC ......(((((((.....(((((.....(((((......)))))...---------((((....))))..........))))).)))))))....... ( -19.90) >DroEre_CAF1 10279 98 - 1 CACUCUUCUGCUGUUUACAUUACAGUUUGCUGUUAGCUUGCAGCAGUAUUAUCGCUGCCAGCCCUGGCUUAAAUUGCAACACAACAGUAGAUACUUCC ......(((((((((.......(((((((..(((((((.(((((.........))))).)))..)))).)))))))......)))))))))....... ( -27.62) >DroYak_CAF1 9559 97 - 1 CACUCUUCUACUGUUUACAUUACAGUUUGCUGUUAGCUUACAGCAGC-UUAUCGGUGCCAGCCCUGGCUUACAUUGCAGCACGACAGUAGAUCCUUCC ......(((((((((............((((((......))))))((-(...(((((..(((....)))..))))).)))..)))))))))....... ( -29.40) >consensus CACUCUUCUACUGUUUACAGUACAGUUUGCUGUUAGCUUACAGCAGU_UU_UCG_UGCCAGCCCUGGUUUACAUUGCAGAACUACAGUGGAUCCUUCC ......(((((((...............(((((......))))).((.........((((....)))).......)).......)))))))....... (-20.51 = -19.31 + -1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:56 2006