Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 786,624 – 786,720 |
Length | 96 |
Max. P | 0.961155 |
Location | 786,624 – 786,720 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 69.62 |
Mean single sequence MFE | -46.08 |
Consensus MFE | -21.03 |
Energy contribution | -23.87 |
Covariance contribution | 2.84 |
Combinations/Pair | 1.13 |
Mean z-score | -2.10 |
Structure conservation index | 0.46 |
SVM decision value | 1.52 |
SVM RNA-class probability | 0.961155 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 786624 96 + 22224390 UGUGCCGCAGAAAGGCCUUCCGGCUGCGGGCGGGAAGGUCCGCCGGACUCAAAGCCGGCUCU---------GUGGACUCC---------------UGGGUAUAUGUGCCCAGGGAGCGCA .((((((((((..((((((((.((.....)).)))))))).(((((........))))))))---------)))...(((---------------((((((....))))))))).)))). ( -55.40) >DroPse_CAF1 174270 81 + 1 UGUGCUGCAGGUAGGCCUUCCUGCUUCGCGCUGUCAUGUCCGCCGGACACAGCAUCGAGUCGAAUGA--------AC----------------------AACAUCUGUC---------CA .(((..(((((........)))))..)))(((((...((((...)))))))))...(.(.((.(((.--------..----------------------..))).)).)---------). ( -23.00) >DroSec_CAF1 102617 96 + 1 UGUGCCGCAGAAAGGCCUUCCGGCUGCGGGCGGGAAGGUCCGCCGGACUCAAAGCCGGCUCU---------GUGGACUCC---------------GGUGCAUAGGUGCCCAGAGAGCGCA .((((((((((..((((((((.((.....)).)))))))).(((((........))))))))---------)))..(((.---------------((.(((....))))).))).)))). ( -49.90) >DroEre_CAF1 116037 96 + 1 UGUGCCGCAGGAAGGCCUUCCGGCUGCGGGCAGGAAGGUCCGCCGGACUCAAAGCCGGCUCC---------GUGGACUCC---------------GGAACAUAGGUGCCUAGAGAGCGCA .(((((((.(((.((((((((.((.....)).)))))))).(((((........))))))))---------)))..(((.---------------.(.((....))..)..))).)))). ( -41.00) >DroYak_CAF1 102910 105 + 1 UGUGCCGCAGAAAGGCCUUCCGGCUGCGGGCAGGAAGGUCCGCCGGACUCAAAGCCGGCUCCACGGACUCUGCGGACUCC---------------GGGGCAUAGGUGUCCAGGGAGCGCA .((((((((((..((((((((.((.....)).)))))))).(((((........))))).........))))))).((((---------------.(((((....)))))..))))))). ( -52.50) >DroAna_CAF1 123544 111 + 1 UGUGCCGGAGAAAGGCCUUACGGCAGCGUGCCGGCAAGUCCGCCGGACUCAAGGCGGGCUCU---------AUGGCGUCCAACUGACUGGCGGAUGAUCCUUGGGUGUCCAGGGAUCGCA ..((((((......(((....)))......)))))).(((((((((..(((.(..((((.(.---------...).))))..)))))))))))))(((((((((....)))))))))... ( -54.70) >consensus UGUGCCGCAGAAAGGCCUUCCGGCUGCGGGCAGGAAGGUCCGCCGGACUCAAAGCCGGCUCU_________GUGGACUCC_______________GGGGCAUAGGUGCCCAGGGAGCGCA ....((((.....((((((((.((.....)).)))))))).(((((........)))))............)))).............................((((.......)))). (-21.03 = -23.87 + 2.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:24 2006