Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,083,442 – 6,083,532 |
Length | 90 |
Max. P | 0.528056 |
Location | 6,083,442 – 6,083,532 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 99.56 |
Mean single sequence MFE | -31.36 |
Consensus MFE | -30.70 |
Energy contribution | -30.90 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.23 |
Structure conservation index | 0.98 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.528056 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6083442 90 - 22224390 GUGUUGCACCUCUAACCUCACUGCUGUGGCACAUACCUUGUGCCCCAUAAUGCCCUUCCAAUCACUGGAGAUGUGGGUGUGGGUGGGUGG ......(((((...(((.(((...((.((((((.....)))))).))....(((((((((.....)))))....))))))))))))))). ( -32.00) >DroSec_CAF1 730 90 - 1 GUGUUGCACCUCUAACCUCACUGCUGUGGCACAUACCUUGUGCCCCAUAAUGCCCUUCCAAUCACUGGAGAUGUGGGUGUGGGUGGGUGG ......(((((...(((.(((...((.((((((.....)))))).))....(((((((((.....)))))....))))))))))))))). ( -32.00) >DroSim_CAF1 978 90 - 1 GUGUUGCACCUCUAACCUCACUGCUGUGGCACAUACCUUGUGCCCCAUAAUGCCCUUCCAAUCACUGGAGAUGUGGGUGUGGGUGGGUGG ......(((((...(((.(((...((.((((((.....)))))).))....(((((((((.....)))))....))))))))))))))). ( -32.00) >DroEre_CAF1 714 90 - 1 GUGUUGCACCUCUAACCUCACUGCUGUGGCACAUACCUUGUGCCCCAUAAUGCCCUUCCAAUCACUGGAGAUGUGGGUGUGGGUGGGUGG ......(((((...(((.(((...((.((((((.....)))))).))....(((((((((.....)))))....))))))))))))))). ( -32.00) >DroYak_CAF1 912 90 - 1 GUGUUGCACCUCUAACCUCACUGCUGUGGCACAUACCUUGUGCCCCAUAAUGCCCUUCCAAUCACUGGAGAUGUGGGUGUGGGUGGAUGG ........((((((.((.(((...((.((((((.....)))))).))....(((((((((.....)))))....))))))))))))).)) ( -28.80) >consensus GUGUUGCACCUCUAACCUCACUGCUGUGGCACAUACCUUGUGCCCCAUAAUGCCCUUCCAAUCACUGGAGAUGUGGGUGUGGGUGGGUGG ......(((((...(((.(((...((.((((((.....)))))).))....(((((((((.....)))))....))))))))))))))). (-30.70 = -30.90 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:47 2006