Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,071,297 – 6,071,399 |
Length | 102 |
Max. P | 0.614236 |
Location | 6,071,297 – 6,071,399 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 96.67 |
Mean single sequence MFE | -24.90 |
Consensus MFE | -20.94 |
Energy contribution | -21.34 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.48 |
Structure conservation index | 0.84 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.614236 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6071297 102 + 22224390 AGAGAACAGUGAAAAUAACGAAAGUGCGGGCACAGUUAAUUAGCAAAUUAACGAGUGGGUGGGCACAGGAUUUCAGGAUUUCGAUAUAUUUUGGAUUCCUGC ...(..(((((......((....)).....))).(((((((....))))))).......))..).(((((.((((((((........)))))))).))))). ( -25.50) >DroSec_CAF1 2623 102 + 1 AGAGAACAGUGAAAAUAACGAGAGUGCGGGCAGAGUUAAUUAGCAAAUUAACGAGUGGGUGGGCACAGGAUUUCAGGAUUUCGAUAUAUUUUGGAUUCCUGA .......................((((..((...(((((((....)))))))......))..))))......((((((.(((((......))))).)))))) ( -23.50) >DroSim_CAF1 4592 102 + 1 AGAGAACAGUGAAAAUAACGAGAGUGCGGGCAGAGUUAAUUAGCAAAUUAACGAGUGGGUGGGCACAGGAUUUCAGGAUUUCGAUAUAUUUUGGAUUCCUGA .......................((((..((...(((((((....)))))))......))..))))......((((((.(((((......))))).)))))) ( -23.50) >DroEre_CAF1 17367 102 + 1 AGUGAACAGUGAAAAUAACGAGAGUGCGGGCACAGUUAAUUAGCAAAUUAACGAGUGGGUCGCCACAGGAUUUCAGGAUUUCGAUAUAUUUUGGAUUCCUGC .((((.(((((......((....)).....))).(((((((....)))))))...))..))))..(((((.((((((((........)))))))).))))). ( -26.80) >DroYak_CAF1 4452 102 + 1 AGAGAACAGUGAAAAUAACGAGAGUGCGGGCACAGUUAAUUAGCAAAUUAACGAGUGGGUGGCCACAGGAUAUCAGGAUUUCGAUAUAUUUUGGAUUCCUGC ........(((......((....)).....))).(((((((....)))))))..((((....)))).......(((((.(((((......))))).))))). ( -25.20) >consensus AGAGAACAGUGAAAAUAACGAGAGUGCGGGCACAGUUAAUUAGCAAAUUAACGAGUGGGUGGGCACAGGAUUUCAGGAUUUCGAUAUAUUUUGGAUUCCUGC ........(((......((....)).....))).(((((((....)))))))..(((......))).......(((((.(((((......))))).))))). (-20.94 = -21.34 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:46 2006