Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,070,780 – 6,070,885 |
Length | 105 |
Max. P | 0.988966 |
Location | 6,070,780 – 6,070,885 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 97.52 |
Mean single sequence MFE | -24.36 |
Consensus MFE | -23.78 |
Energy contribution | -23.58 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.06 |
Mean z-score | -1.68 |
Structure conservation index | 0.98 |
SVM decision value | 2.14 |
SVM RNA-class probability | 0.988966 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6070780 105 + 22224390 AUUACAGCACUUCCAAAUACGGUAGUACCACUAUCUUAGGAUAUUGUUUUCAAUACGGUAUGGACACACUGCAAAGUGUUUGGAAUGUUCGAUAUUUGUGUAAAA .((((((((.((((((((((.(((((.((.........))(((((((.......)))))))......)))))...)))))))))))))..........))))).. ( -24.80) >DroSec_CAF1 2106 105 + 1 AUUACAGCACUUCCAAAUACGGUAGUACCACUAUUUUAGGAUAUUGUUUUCAAUACGGUAUGGACACACUGCAAAGUGUUUGGAAUGUUCGAUAUUUGUGUAAAA .((((((((.((((((((((.(((((.((.........))(((((((.......)))))))......)))))...)))))))))))))..........))))).. ( -24.80) >DroSim_CAF1 4075 105 + 1 AUUACAGCACUUCCAAAUACGGUAGUACCACUAUUUUAGGAUAUUGUUUUCAAUACGGUAUGGACACACUGCAAAGUGUUUGGAAUGUUCGAUAUUUGUGUAAAA .((((((((.((((((((((.(((((.((.........))(((((((.......)))))))......)))))...)))))))))))))..........))))).. ( -24.80) >DroEre_CAF1 16844 105 + 1 AUUACAGCAUUUCCAAAUACGGUAGUACAACUAUUUUAGGAUAUUGUUUUCAAUACGGUAUGGACACACUGCAAAGUGUUUGGGAUGUUCGAUAUUUGUGUAAAA .((((((((((.((((((((.(((((....(((...))).(((((((.......)))))))......)))))...)))))))))))))..........))))).. ( -23.30) >DroYak_CAF1 3928 105 + 1 AUUACAACACUUCCAAAUACGGUAGUACCAAUAUUUUAGGAUAUUGUUUUCAAUACGGUAUGGACACACUGCAAAGUGUUUGGGAUGUUCGAUAUUUGUGUAAAA .((((((((.((((((((((.(((((..(((((((....)))))))..((((........))))...)))))...)))))))))))))..........))))).. ( -24.10) >consensus AUUACAGCACUUCCAAAUACGGUAGUACCACUAUUUUAGGAUAUUGUUUUCAAUACGGUAUGGACACACUGCAAAGUGUUUGGAAUGUUCGAUAUUUGUGUAAAA .((((((((.((((((((((.(((((.((.........))(((((((.......)))))))......)))))...)))))))))))))..........))))).. (-23.78 = -23.58 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:45 2006