Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,065,655 – 6,065,768 |
Length | 113 |
Max. P | 0.894465 |
Location | 6,065,655 – 6,065,768 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.33 |
Mean single sequence MFE | -33.15 |
Consensus MFE | -26.85 |
Energy contribution | -26.85 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.09 |
Mean z-score | -2.06 |
Structure conservation index | 0.81 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.894465 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6065655 113 + 22224390 AAGUAACGCCGAUAA-CGAUUGUCGUUUU--UGUUCAGUUUAAAUUAAACAAUUCGCAUAGUU----CUUAUCGGCAACGUGACAAUUGUCCAAAUUGCCGACUAACGCUGAGCGGGCUG .......((((((((-.((((((((...(--((((.(((....))).)))))..)).))))))----.)))))(((((..((((....)).))..)))))......(((...)))))).. ( -28.50) >DroSec_CAF1 76561 115 + 1 AAGUAACGCCGAUAA-CGAUUGUCAGUUCAGUGUUCAGUUUAAAUUAAACAAUGCGCGUAGUU----CUUAUCGGCAACGUGACAAUUGUCCAAAUUGUCGACUAACGCUGAGCGGGCAG .......(((((((.-....)))).((((((((((.((((..((((..(((((.(((((.(((----......))).)))))...)))))...))))...)))))))))))))).))).. ( -35.80) >DroSim_CAF1 72672 115 + 1 AAGUAACGCCGAUAA-CGAUUGUCAGUUCAGUGUUCAGUUUAAAUUAAACAAUGCGCGUAGUU----CUUAUCGGCAACGUGACAAUUGUCCAAAUUGUCGACUAACGCUGAGCGGGCAG .......(((((((.-....)))).((((((((((.((((..((((..(((((.(((((.(((----......))).)))))...)))))...))))...)))))))))))))).))).. ( -35.80) >DroYak_CAF1 77073 113 + 1 AAGUAACACCGAUAACCGAUUGUCGGUUC--UGUUCAGUUU-----AAGCAAUGCGCGUAUUUCUUUCUUAUCGGCAACGUGACAAUUGUCCAAAUUGUCAACUAACGCUGAGCGGGUAG .......((((((((....))))))))((--((((((((..-----..((.....))((.............((....))((((((((.....))))))))....))))))))))))... ( -32.50) >consensus AAGUAACGCCGAUAA_CGAUUGUCAGUUC__UGUUCAGUUUAAAUUAAACAAUGCGCGUAGUU____CUUAUCGGCAACGUGACAAUUGUCCAAAUUGUCGACUAACGCUGAGCGGGCAG .......((((((((....))))).......((((((((((.....)))).....((((((((.........((....)).(((((((.....))))))))))).))))))))))))).. (-26.85 = -26.85 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:43 2006