Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,065,496 – 6,065,588 |
Length | 92 |
Max. P | 0.951045 |
Location | 6,065,496 – 6,065,588 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.02 |
Mean single sequence MFE | -29.30 |
Consensus MFE | -20.42 |
Energy contribution | -20.30 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.07 |
Mean z-score | -2.39 |
Structure conservation index | 0.70 |
SVM decision value | 1.41 |
SVM RNA-class probability | 0.951045 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6065496 92 - 22224390 UUUAAUGACGGAUCU--------------------CGGAUCUCGAUUCUUUUGUCUCACUGGCGGGAUGUCGAGAAUCAAGAUCGAUUAUAUCAGUUGCU--------UGCUGUAUAAAC ..........(((((--------------------.((.(((((((..(((((((.....))))))).))))))).)).)))))..(((((.((((....--------.))))))))).. ( -27.90) >DroSec_CAF1 76402 92 - 1 UUUAAUGACGGAUCU--------------------CGGAUCUCGAUUCUUUUGUCUCACUGGCGGGAUGUCGAGAAUCAAGAUCGAUUAUAUCAGUUGCU--------UGCUGUAUAAAC ..........(((((--------------------.((.(((((((..(((((((.....))))))).))))))).)).)))))..(((((.((((....--------.))))))))).. ( -27.90) >DroSim_CAF1 72513 92 - 1 UUUAAUGACGGAUCU--------------------CGGAUCUCGACUCUUUUGUCUCACUGGCGGGAUGUCGAGAAUCAAGAUCAAUUAUAUCAGUUGCU--------UGCUGUAUAAAC ..........(((((--------------------.((.(((((((..(((((((.....))))))).))))))).)).)))))..(((((.((((....--------.))))))))).. ( -29.40) >DroYak_CAF1 76875 119 - 1 UUUGAUGACGGAUCUCUCGGAUCUUUCGGAUCUUUCGGAUCUCUAUUGUUUUGUCUCCCUGGCGGGAUGUCGAGAAUCAAGAUUGAUUAUAUCAGUUGCUUGGUGGCUUGCUGUAUAAA- ((((((...((((((...(((((.....)))))...))))))......(((((.(((((....)))).).))))))))))).....(((((.((((.(((....)))..))))))))).- ( -32.00) >consensus UUUAAUGACGGAUCU____________________CGGAUCUCGAUUCUUUUGUCUCACUGGCGGGAUGUCGAGAAUCAAGAUCGAUUAUAUCAGUUGCU________UGCUGUAUAAAC ..........(((((......................(((((((((..(((((((.....))))))).)))))).))).)))))..(((((.((((.............))))))))).. (-20.42 = -20.30 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:42 2006