Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,064,648 – 6,064,755 |
Length | 107 |
Max. P | 0.798925 |
Location | 6,064,648 – 6,064,755 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 89.04 |
Mean single sequence MFE | -21.18 |
Consensus MFE | -16.90 |
Energy contribution | -16.52 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.10 |
Mean z-score | -1.82 |
Structure conservation index | 0.80 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.798925 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6064648 107 - 22224390 GAAACAGCACAGAUAAGAGUCAUAUGAAUAAUUGGGGCUCUUAUCUGCCGAAAUGCAUAAUCUCAUUGUAUCCACCAUCAUCAUUAUUCGCCCGUAAAAUAAAAU--GC ......((.((((((((((((..((.....))...)))))))))))).....(((((.........)))))..................))..............--.. ( -20.20) >DroSec_CAF1 75584 107 - 1 GAAACAGCAGAGAUAAGAGUCAUAUGAAUAAUUGGGGCUCUUAUCUGCCAAAAUGCAUAAUCUAGUUGUAUCCACCAUCAUCAUUAUUCGCCCGUAAAAUAAAAU--AC ((.((((((((((((((((((..((.....))...))))))))))(((......)))...))).))))).)).................................--.. ( -22.20) >DroSim_CAF1 71685 107 - 1 GAAACAGCAGAGAUAAGAGUCAUAUGAAUAAUUGGGGCUCUUAUCUGCCGAAAUGCAUAAUCUAGCUGUAUCCACCAUCAUCAUUAUUCGCCCGUAAAAUAAAAU--AC ((.((((((((((((((((((..((.....))...))))))))))(((......)))...))).))))).)).................................--.. ( -24.60) >DroYak_CAF1 76052 104 - 1 -----AGCACAGAUAAGAGUUAUACGAAUAAUUGGGGCUCUUAUCUACCCAAAUGCAUAAUCUUUUUGUAUCCACCAUCAUCAUCAGUCGCCCCCAUAAUAAAAUAUGC -----.(((((((((((((((...(((....))).)))))))))))......(((((.........)))))...............)).))...((((......)))). ( -17.70) >consensus GAAACAGCACAGAUAAGAGUCAUAUGAAUAAUUGGGGCUCUUAUCUGCCGAAAUGCAUAAUCUAGUUGUAUCCACCAUCAUCAUUAUUCGCCCGUAAAAUAAAAU__AC ......((..(((((((((((...(((....))).)))))))))))......(((((.........)))))..................)).................. (-16.90 = -16.52 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:39 2006