Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,055,263 – 6,055,380 |
Length | 117 |
Max. P | 0.804485 |
Location | 6,055,263 – 6,055,380 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.67 |
Mean single sequence MFE | -31.27 |
Consensus MFE | -27.76 |
Energy contribution | -28.89 |
Covariance contribution | 1.13 |
Combinations/Pair | 1.06 |
Mean z-score | -1.73 |
Structure conservation index | 0.89 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.804485 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6055263 117 + 22224390 --GGGAGCGUGUCGCCAUUUUGGCUCCUGUCGUGUCCUUGCCAUGGCUAAAAUGGAUUUGCAUGUAAAUUUGUUUU-CGCCUUAUAGUCGCAAAUUUUUUGCUCGAUUUUGCACAUUCUC --(((((.((((.(((.....)))....((((............(((.((((..((((((....))))))..))))-.)))........((((.....)))).))))...)))).))))) ( -29.70) >DroSec_CAF1 66626 117 + 1 --GGGAGCGUGUCGCCAUUUUGGCUCCUGGCGUGUCCUUGCCAUGGCUAAAAUGGAUUUGCAUGUAAAUUUGUUUU-CGCCUUAUAGUCGCAAAUUUUUUGCUCGAUUUUGCACAUUCUC --(((((.((((..(((((((((((..(((((......))))).)))))))))))....(((...((((((((...-(........)..))))))))..)))........)))).))))) ( -36.80) >DroYak_CAF1 64594 117 + 1 --CGAAGCGUGUCGCCAUUUUGGCUCCUGGCGUGUCCUUGCCAUGGCUAUAAUGGAUUUGCAUGUAAAUUUGUUUU-CGCCUUAUAGUCGCAAAUUUUUUGCUCGAUUUUGCACAUUCUC --....(((.(((((((((.(((((..(((((......))))).))))).)))))....(((...((((((((...-(........)..))))))))..))).))))..)))........ ( -32.10) >DroAna_CAF1 69830 115 + 1 UGUGAAGCGUGUCGCCAUUUUGGCUCCUGGCGUGUCCUUGCC-----UGAAAUGGAUUUGCAUGUAAAUUUGUUUUGCGCCUUAUAGUCACAAAUUUUUUGCUCGAUUUUGCACAUUCUC (((((.((((...(((.....)))....((((......))))-----.((((..((((((....))))))..)))))))).......))))).......(((........)))....... ( -26.50) >consensus __GGAAGCGUGUCGCCAUUUUGGCUCCUGGCGUGUCCUUGCCAUGGCUAAAAUGGAUUUGCAUGUAAAUUUGUUUU_CGCCUUAUAGUCGCAAAUUUUUUGCUCGAUUUUGCACAUUCUC ......(((.(((((((((((((((..(((((......))))).)))))))))))....(((...((((((((................))))))))..))).))))..)))........ (-27.76 = -28.89 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:33 2006