Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,053,921 – 6,054,025 |
Length | 104 |
Max. P | 0.648295 |
Location | 6,053,921 – 6,054,025 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 88.53 |
Mean single sequence MFE | -28.35 |
Consensus MFE | -19.84 |
Energy contribution | -19.52 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.12 |
Mean z-score | -1.84 |
Structure conservation index | 0.70 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.648295 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6053921 104 + 22224390 CAAUUUGUGAUAAUUGAAGGCACCA-AAUCGAUUGGACAG--ACAUAAUUGGUUUAGCAAUUUGGCAAGAUCGCAAAACUGUGCCACAAUUUUCCGCAGAUUG-----CAAU (((((((((..(((((..(((((.(-(((((((((.....--...)))))))))).((.((((....)))).))......))))).)))))...)))))))))-----.... ( -29.20) >DroSec_CAF1 65284 108 + 1 CAAUUUGUGAUAAUUGAAGGCACCC-AGUCGAUUGGACAG--GCAUAAUUGGUUUAGCAAUUUGGCAAGAUCGCAAAAGUGUGCCGCAAUUU-CCCCAGAUUUGCAAUCAAU .((((((.(..(((((..(((((((-.(((.....))).)--).......(((((.((......)).)))))........))))).))))).-.).)))))).......... ( -23.20) >DroSim_CAF1 61044 103 + 1 CAAUUUGUGAUAAUUGAAGGCACCC-AGUCGAUUGGACAG--GCAUAAUUGGUUUAGCAAUUUGGCAAGAUCGCAAAACUGUGCCGCAAUUU-CCCCAGAUUG-----CAAU (((((((.(..(((((..(((((((-.(((.....))).)--).......(((((.((.((((....)))).)).)))))))))).))))).-.).)))))))-----.... ( -27.50) >DroYak_CAF1 62951 106 + 1 CGAUUUGUGAUAAUUGAAGGCACCCAAAUCGAUUGGGCUGCUGCCUAAUUGGUUUAGCAAUUUGGCAAGAUCGCAAAAGUGUGCCACAAUUU-CCUCGAUUUG-----CAAU (((.(((.(..(((((..(((((.((((((((((((((....))))))))))))).((.((((....)))).))....).))))).))))).-.).))).)))-----.... ( -33.50) >consensus CAAUUUGUGAUAAUUGAAGGCACCC_AAUCGAUUGGACAG__GCAUAAUUGGUUUAGCAAUUUGGCAAGAUCGCAAAACUGUGCCACAAUUU_CCCCAGAUUG_____CAAU (((((((.(..(((((..(((((...(((((((((..........)))))))))..((.((((....)))).))......))))).)))))...).)))))))......... (-19.84 = -19.52 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:32 2006