Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,043,000 – 6,043,092 |
Length | 92 |
Max. P | 0.519185 |
Location | 6,043,000 – 6,043,092 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 93.12 |
Mean single sequence MFE | -26.40 |
Consensus MFE | -24.50 |
Energy contribution | -23.88 |
Covariance contribution | -0.62 |
Combinations/Pair | 1.14 |
Mean z-score | -1.30 |
Structure conservation index | 0.93 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.519185 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6043000 92 - 22224390 AGU-CGAGAAAGGAAUCAA-AAAUGUGGGUCAGUUCACUGACAUGGGCCCGUUAACUGGGUCGAGUGAUUGCUAAUUGAUGGCUCUCACGAAAC ..(-((.((.((..(((((-....(..((((((....)))))...((((((.....))))))......)..)...)))))..)).)).)))... ( -25.90) >DroSim_CAF1 50965 90 - 1 AGU-CGAGAAAGGGGUGAA-AA--GUGGGUCAGUUCACUGACAUGGGCCCGUUAACUGGGUCGAGUGAUUGCUAAUUGAUGGCUCUCACGAAAC ...-..........((((.-..--....(((((....)))))...((((((.....))))))((((.(((.......))).))))))))..... ( -25.10) >DroEre_CAF1 51344 90 - 1 AGU-CGAGAAAUGGGUGAA-AA--GUGGGUCAGUUCACUGACUUGGACCUAUUAACUGGGUCGAGUGAUUGCUAAUUGAUGGCUCUCACGAAAC ...-..........((((.-..--..(((((((....))))))).((((((.....))))))((((.(((.......))).))))))))..... ( -25.40) >DroYak_CAF1 52987 92 - 1 AGUCCGAGAAAGGGGUGAAAAA--GUGGGUCAGUUCACUGACUUGGGCCCAUUAACUGGGUCGAGUGAUUGCUAAUUGAUGGCUCUCACGAAAC ..(((......)))((((....--..(((((((....))))))).((((((.....))))))((((.(((.......))).))))))))..... ( -29.20) >consensus AGU_CGAGAAAGGGGUGAA_AA__GUGGGUCAGUUCACUGACAUGGGCCCAUUAACUGGGUCGAGUGAUUGCUAAUUGAUGGCUCUCACGAAAC ........................(((((((((....)))))...((((((.....))))))((((.(((.......))).))))))))..... (-24.50 = -23.88 + -0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:27 2006