Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,042,040 – 6,042,134 |
Length | 94 |
Max. P | 0.595679 |
Location | 6,042,040 – 6,042,134 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 63.82 |
Mean single sequence MFE | -26.70 |
Consensus MFE | -10.49 |
Energy contribution | -11.21 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.40 |
Mean z-score | -1.82 |
Structure conservation index | 0.39 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.595679 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6042040 94 - 22224390 UUAAUUCCAUGUUC----UUUAC----AGU------CACCA----A--GUGCGUUUUGCAUUGA------GGAAAUCCCUAGAGGUCAAGCACCUUUUGACCUUUGGCAUUUAUGGAAAU ....(((((((...----.....----...------..((.----(--((((.....)))))..------))......((((((((((((.....))))))))))))....))))))).. ( -27.10) >DroSec_CAF1 54133 97 - 1 CUAAUUAUAUAUCC----UUUAUA-UUAGC------CACCA----A--GUGCGAUUGGCCCUGA------GGAAAUCCCUGGAGGUCAAGCACCUCUUGACCUUUGGCAUUUAUGGAAAU (((((.(((.....----..))))-))))(------((..(----(--((((((((..((....------)).))))...((((((((((.....)))))))))).)))))).))).... ( -25.10) >DroSim_CAF1 50005 94 - 1 CUAAUUAUAUAUCC----CUUAC----AGC------CAACA----A--GUGCGAUUGGCCCUAA------GGAAAUCCCUGGAAGUCAAGCACCUCUUGACCUUUGGCAUUUAUGGAAAU .............(----((((.----.((------((((.----.--....).)))))..)))------))...((((..((.((((((.....)))))).))..).......)))... ( -21.61) >DroMoj_CAF1 83957 100 - 1 UUAAAUGCUUCUUU----CUUCC----AGC------CAUUUGUUGAGUGUUCGCUUCGCACUGGCUGAAGGCGAGUCCCUG----UCCA--ACCUGUUGACAUUCGCAAUCUAUGGAAAU ........((((..----((((.----(((------((..(((.((((....)))).))).)))))))))(((((....((----((.(--(....))))))))))).......)))).. ( -25.40) >DroAna_CAF1 58156 108 - 1 GGUACUAUAUGUAGUUCUUUGAUCCUCAGCUACCAGCACGA----G--GUGAGAUUCGCCCUGA------AGGACUCCCAGGAGGUGAGCAACCUGCUCACCUUUGCGGUUUAUGGAAAU ....(((((...((((((((........((.....))....----(--(((.....))))..))------)))))).((.((((((((((.....))))))))))..))..))))).... ( -34.30) >consensus CUAAUUAUAUAUCC____UUUAC____AGC______CACCA____A__GUGCGAUUCGCCCUGA______GGAAAUCCCUGGAGGUCAAGCACCUCUUGACCUUUGGCAUUUAUGGAAAU ...........................................................................(((((((((((((((.....)))))))))))).......)))... (-10.49 = -11.21 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:26 2006