Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,030,820 – 6,030,920 |
Length | 100 |
Max. P | 0.836210 |
Location | 6,030,820 – 6,030,920 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 76.41 |
Mean single sequence MFE | -21.02 |
Consensus MFE | -11.03 |
Energy contribution | -12.34 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.06 |
Mean z-score | -2.23 |
Structure conservation index | 0.52 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.836210 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6030820 100 - 22224390 UUACAAGAAAACAAGAAAUGUCGGCUAACUAUGCGUAUACGUGAUUUUUGACCUUUGAGU-CCUUCGAAUAUUACGUAUACGCACUGUUUUGAAUUUUAUA ..............(((((.((((..(((..((((((((((((((.(((((.........-...))))).))))))))))))))..))))))))))))... ( -26.50) >DroSec_CAF1 43069 96 - 1 UUACA-GAAAACA-CAAAUGUUGGCUAACUAUACGUAUACGUGAUUUUUA--CUUUAGUU-CUAUCGAAUAUUACGUAUACGCAGUGUUUUUAAUUUAUAA .....-(((((((-(....(((....)))....((((((((((((.....--.....(((-(....))))))))))))))))..))))))))......... ( -21.20) >DroEre_CAF1 38798 83 - 1 ----------ACAAGAAAUGUCGGCUAACUAUACGUAUACGUGAUUUUUGACUUAU-------UUCGAAUAUUAAGU-UACGCACCGAUAUUAAUUUUAUA ----------......((((((((.......((((....)))).....(((((((.-------.........)))))-))....))))))))......... ( -15.40) >DroYak_CAF1 40927 101 - 1 UUUCUCGAAAACAAGAAAUGUUGGCUAACUGUACGUAUACGUGAUAUUUGACUUUUGAGUCCAUUCGAAUAUUAGGUAUGCACACUGUUUUUAAUUUUAUA ......(((((((..........((.....))..((((((.((((((((((....((....)).)))))))))).))))))....)))))))......... ( -21.00) >consensus UUACA_GAAAACAAGAAAUGUCGGCUAACUAUACGUAUACGUGAUUUUUGACCUUUGAGU_C_UUCGAAUAUUACGUAUACGCACUGUUUUUAAUUUUAUA .................................((((((((((((.(((((.............))))).))))))))))))................... (-11.03 = -12.34 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:25 2006