Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,030,552 – 6,030,656 |
Length | 104 |
Max. P | 0.888180 |
Location | 6,030,552 – 6,030,656 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 92.97 |
Mean single sequence MFE | -16.28 |
Consensus MFE | -15.65 |
Energy contribution | -16.21 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.66 |
Structure conservation index | 0.96 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.888180 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6030552 104 + 22224390 UGUCGGAACUUUUGCUUUCUACCCUUCC-CCAAAAAUUCCUCUUCCGUUGGAAAGUUUUAUGCUUUCUCUUUUUUAUUUUGCUGUUUGGCAAUUUUAACCAGCGC ....((((.(((((..............-.))))).)))).....(((((((((((.....))))))...........(((((....))))).......))))). ( -19.36) >DroSec_CAF1 42801 104 + 1 UGUCGGAACUUUUGCUUUCUACCCUUCC-CCAAAAAUUCCACUUCCGUUGGAACGUUUUAUGCUUUCUCUUUUUUAUUUUGCUGUUUGGCAAUUUUAACCAGCGC ....((((.(((((..............-.))))).)))).....((((((...((.....))...............(((((....)))))......)))))). ( -17.16) >DroEre_CAF1 38534 101 + 1 UGUCGGAACUUUUGCUUUCUACCCUUUCCCCAAAAAUUCCUCUUCCGUUGGAAACUUUUAUACUUUCUCUUUUU----UUGCUAUUUGGCAAUUUUAACCAGCGC ....((((.(((((................))))).)))).....((((((((....))...............----(((((....)))))......)))))). ( -13.39) >DroYak_CAF1 40660 103 + 1 UGUCGGAACUUUUGCUUUCUACCCUUUU-CCAAAAAUUCCUCUUCCGUUGGAAACUUUUAUGCUUUCUUUUUUUUGU-UUGCUGUUUGGCAAUUUUAACCAGCGC ....((((.(((((..............-.))))).)))).....((((((((((....................))-))(((....)))........)))))). ( -15.21) >consensus UGUCGGAACUUUUGCUUUCUACCCUUCC_CCAAAAAUUCCUCUUCCGUUGGAAACUUUUAUGCUUUCUCUUUUUUAU_UUGCUGUUUGGCAAUUUUAACCAGCGC ....((((.(((((................))))).)))).....(((((((((((.....))))))...........(((((....))))).......))))). (-15.65 = -16.21 + 0.56)
Location | 6,030,552 – 6,030,656 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 92.97 |
Mean single sequence MFE | -18.09 |
Consensus MFE | -16.34 |
Energy contribution | -16.34 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.46 |
Structure conservation index | 0.90 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.651472 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6030552 104 - 22224390 GCGCUGGUUAAAAUUGCCAAACAGCAAAAUAAAAAAGAGAAAGCAUAAAACUUUCCAACGGAAGAGGAAUUUUUGG-GGAAGGGUAGAAAGCAAAAGUUCCGACA ((..((((.......))))....))...........(.(((((.......))))))..(....).((((((((((.-..............)))))))))).... ( -19.16) >DroSec_CAF1 42801 104 - 1 GCGCUGGUUAAAAUUGCCAAACAGCAAAAUAAAAAAGAGAAAGCAUAAAACGUUCCAACGGAAGUGGAAUUUUUGG-GGAAGGGUAGAAAGCAAAAGUUCCGACA ..(((..(((...((.((.....((.................)).(((((.((((((.(....)))))))))))))-).))...)))..)))............. ( -18.93) >DroEre_CAF1 38534 101 - 1 GCGCUGGUUAAAAUUGCCAAAUAGCAA----AAAAAGAGAAAGUAUAAAAGUUUCCAACGGAAGAGGAAUUUUUGGGGAAAGGGUAGAAAGCAAAAGUUCCGACA ((..((((.......))))....))..----.....(.((((.(.....).)))))..(....).((((((((((................)))))))))).... ( -17.09) >DroYak_CAF1 40660 103 - 1 GCGCUGGUUAAAAUUGCCAAACAGCAA-ACAAAAAAAAGAAAGCAUAAAAGUUUCCAACGGAAGAGGAAUUUUUGG-AAAAGGGUAGAAAGCAAAAGUUCCGACA ((..((((.......))))....))..-..........(.((((......)))).)..(....).((((((((((.-..............)))))))))).... ( -17.16) >consensus GCGCUGGUUAAAAUUGCCAAACAGCAA_AUAAAAAAGAGAAAGCAUAAAACUUUCCAACGGAAGAGGAAUUUUUGG_GAAAGGGUAGAAAGCAAAAGUUCCGACA ((..((((.......))))....))...........................((((...))))..((((((((((................)))))))))).... (-16.34 = -16.34 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:24 2006