Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,030,111 – 6,030,229 |
Length | 118 |
Max. P | 0.567374 |
Location | 6,030,111 – 6,030,229 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.89 |
Mean single sequence MFE | -30.95 |
Consensus MFE | -26.92 |
Energy contribution | -27.80 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.06 |
Mean z-score | -1.38 |
Structure conservation index | 0.87 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567374 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6030111 118 - 22224390 CCUCACGAGGUACUGGCAUUAUUGAAUCAAACUUUUACUUGGCCGGCGUCCUCU--GUUUGCCAUUUGGGAAGCUAUUAAAGUGAAAUUUCGUUGGGAUUCAAUAAAGCUUACAUAUUGC .....(((.(((..(((.((((((((((.(((((((((((....(((.((((..--((.....))..)))).)))....))))))))....)))..)))))))))).))))))...))). ( -30.60) >DroSec_CAF1 42362 120 - 1 CCUCACGAGGUACUCGCAUUAUUGAAUCAAACUUUUACUUGGCCGGCGUCCUCUGUGUUUGCCAUUUGGGAAGCUAUUAAAGUGAAAUUUCGUUGGGAUUCAAUAAAGCUUACAUAUUGC (((....))).....((.((((((((((.(((((((((((....(((.((((..(((.....)))..)))).)))....))))))))....)))..)))))))))).))........... ( -32.50) >DroEre_CAF1 38106 110 - 1 CCUCACGAGGUACUCGUAUUAUUGAAUCAAACUUUUACUUGGCCGGAGUCCUCUGUGCUUGCCAUUUGGGAGGCUAUUAAAGUGAAAUUUUGUUGGGAUUCAAUAAAGCU---------- ....(((((...))))).((((((((((.(((((((((((...((((....)))).((((.((....)).)))).....))))))))....)))..))))))))))....---------- ( -30.80) >DroYak_CAF1 40276 120 - 1 CCUCACGAGGUACUCGCAUUAUUGAAUCAAACUUUUACUUGGCCGGCAUCCUCUGUGCUUGUGAUUUGGGAGACUGUUAAGGUGAAAUUUAGUUGGGAUUCAAUAAAGCUCACAUAUUGG (((....))).....((.((((((((((.(((((((((((...(((..((((..((.(....)))..))))..)))...)))))))....))))..)))))))))).))........... ( -29.90) >consensus CCUCACGAGGUACUCGCAUUAUUGAAUCAAACUUUUACUUGGCCGGCGUCCUCUGUGCUUGCCAUUUGGGAAGCUAUUAAAGUGAAAUUUCGUUGGGAUUCAAUAAAGCUUACAUAUUGC (((....))).....((.((((((((((.(((((((((((....(((.((((..(((.....)))..)))).)))....))))))))....)))..)))))))))).))........... (-26.92 = -27.80 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:22 2006