Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,015,821 – 6,015,914 |
Length | 93 |
Max. P | 0.999966 |
Location | 6,015,821 – 6,015,914 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 96.13 |
Mean single sequence MFE | -27.87 |
Consensus MFE | -26.69 |
Energy contribution | -26.72 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.04 |
Mean z-score | -2.96 |
Structure conservation index | 0.96 |
SVM decision value | 4.97 |
SVM RNA-class probability | 0.999966 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6015821 93 + 22224390 -----GGAAAAAAUGAAGUGGCAACUGCGGCAGGCAGCGGGAAACGGAAGCGGAAACAACGUUAGCGGAAGCGCAUGUCUAACAAGUUGCUGAAACUA -----...........((((((((((..(..(((((.(.(....).)..(((....).......((....)))).)))))..).)))))))...))). ( -28.00) >DroSec_CAF1 35553 93 + 1 -----GGAAAAAAUGAAGUGGCAACUGCGGCAGGCGGCGGGAAACGGAAGCGGAAACAACGUUAGCGGAAGCGCAUGUCUAACAAGUUGCUGAAACUA -----...........((((((((((..(..(((((.(.(....).)..(((....).......((....)))).)))))..).)))))))...))). ( -27.30) >DroSim_CAF1 32555 93 + 1 -----GGAAAAAAUGAAGUGGCAACUGCGGCAGGCAGCGGGAAACGGAAGCGGAAACAACGUUAGCGGAAGCGCAUGUCUAACAAGUUGCUGAAACUA -----...........((((((((((..(..(((((.(.(....).)..(((....).......((....)))).)))))..).)))))))...))). ( -28.00) >DroEre_CAF1 31461 93 + 1 -----GGAAAAAAUGAAGUGGCAACUGCGGCAGGCAGCGGGAAACGGAAGCGGAAACAACGUUAGCGGAAGCGCAUGUCUAACAAGUUGCUGAAACUA -----...........((((((((((..(..(((((.(.(....).)..(((....).......((....)))).)))))..).)))))))...))). ( -28.00) >DroYak_CAF1 33451 93 + 1 -----GGAAAAAAUGAAGUGGCAACUGCGGCAGGCAGCGGGAAACGGAAGCGGAAACAACGUUAGCGGAAGCGCAUGUCUAACAAGUUGCUGAAACUA -----...........((((((((((..(..(((((.(.(....).)..(((....).......((....)))).)))))..).)))))))...))). ( -28.00) >DroAna_CAF1 33927 98 + 1 GGAUAAAAAAAAAUGAAGUGGCAACUGCGGCCGGCAGCAGGAAACGGAAGCGGAAACAACGUUAGCGGAAGCGCAUGUCUAACAAGUUGCUGGAACUA ................(((.((....))..((((((((.(....)(((.(((....).......((....))))...))).....)))))))).))). ( -27.90) >consensus _____GGAAAAAAUGAAGUGGCAACUGCGGCAGGCAGCGGGAAACGGAAGCGGAAACAACGUUAGCGGAAGCGCAUGUCUAACAAGUUGCUGAAACUA ................((((((((((..(..(((((((.(....)...((((.......)))).((....)))).)))))..).)))))))...))). (-26.69 = -26.72 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:20 2006