Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 783,612 – 783,702 |
Length | 90 |
Max. P | 0.532465 |
Location | 783,612 – 783,702 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 80.28 |
Mean single sequence MFE | -30.22 |
Consensus MFE | -16.39 |
Energy contribution | -17.28 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.12 |
Mean z-score | -1.91 |
Structure conservation index | 0.54 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.532465 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 783612 90 + 22224390 CUACCCGGGGAAGUGGCCUUUCCGCUUCCACUGCCAC---------------UUCCACUGCUGGCAUUGCUUGCCGCGUCAUAUGCCAUACUACAUCCCGAUCCU .....((((((((((((...............)))))---------------)))).....(((((((((.....)))....)))))).........)))..... ( -27.56) >DroSec_CAF1 99203 90 + 1 CUGCCCGGGGAAGUGGCCUUUCCGCUUCCACUGCCAC---------------UUCCACUGCUGGCAUUGCUUGCCGCGUCAUAUGCCAUACUGCAUCCCGAUCCU .....((((((((((((...............)))))---------------))))..((((((((((((.....)))....))))))....)))..)))..... ( -28.96) >DroSim_CAF1 60471 90 + 1 CUGCCCGGGGAAGUGGCCUUUCCGCUUCCACUGCCAC---------------UUCCACUGCUGGCAUUGCUUGCCGCGUCAUAUGCCAUACUGCAUCCCGAUCCU .....((((((((((((...............)))))---------------))))..((((((((((((.....)))....))))))....)))..)))..... ( -28.96) >DroEre_CAF1 111986 90 + 1 CUGCCCGGAGAAGUGGCCUUUCCGCUUCCACUGCCAC---------------UUCCACUGCUGGCAUUGCUUGCCGCGUCGUAAGCCAUCCCGCAUCCCGAUCCG .....((((((((((((...............)))))---------------)))...(((.((.((.((((((......)))))).)))).)))......)))) ( -28.26) >DroYak_CAF1 99838 90 + 1 CUGCCCGGGGAAGUGGCCUUUCCGCUUCCACUGCCAC---------------UUCCACUGCUAGCAUUGCUUGCCGCGUCGUAUGCCAUCCCGCAUCCUGAUCCU ..((.((((((((((((...............)))))---------------)))).)))...(((.....))).))((((.((((......))))..))))... ( -24.36) >DroPer_CAF1 173808 94 + 1 CUGCCCGGAGAAGCGGCCGUGCCACUGCCGCUGCUGCCGUUGCUAGCGUUGCUAGCAUUGCUAGCAUUGCUGGUCGCAUCGUAGGCCUGGCUGC----------- ..(((.((...((((((.(.....).)))))).((((.((.(((((((.(((((((...))))))).))))))).))...)))).)).)))...----------- ( -43.20) >consensus CUGCCCGGGGAAGUGGCCUUUCCGCUUCCACUGCCAC_______________UUCCACUGCUGGCAUUGCUUGCCGCGUCAUAUGCCAUACUGCAUCCCGAUCCU ......((((((((((.....)))))))).............................(((.((((.....))))))).......)).................. (-16.39 = -17.28 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:20 2006