Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,006,579 – 6,006,678 |
Length | 99 |
Max. P | 0.878829 |
Location | 6,006,579 – 6,006,678 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 94.46 |
Mean single sequence MFE | -31.30 |
Consensus MFE | -26.70 |
Energy contribution | -27.30 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.57 |
Structure conservation index | 0.85 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.878829 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6006579 99 + 22224390 CCGAUUUGGCGCAGUGCAUCGACCAUGUCCUUGCCCAUGUCCAUGUCCUGGCCCUCCGGCUUAGCGUGCAAUU-----CAAUUAAAGUUGCAUAAGGCCAUCGG (((((..(((.(((..(((.(((.(((........)))))).)))..))))))....(((((...((((((((-----.......)))))))).)))))))))) ( -34.70) >DroSec_CAF1 26713 99 + 1 CCGUUUUGGCGCAGUGCAUCGACCAUGUCCUUGCCCAUGUCCAUGUCCUGGCCCUCCGGCUUAGCGUGCAAUU-----CAAUUAAAGUUGCAUAAGGCCAUCGG (((....(((.(((..(((.(((.(((........)))))).)))..))))))....(((((...((((((((-----.......)))))))).)))))..))) ( -32.00) >DroSim_CAF1 23365 99 + 1 CCGUUUUGGCGCAGUGCAUCGACCAUGUCCUUGCCCAUGUCCAUGUCCUGGCCCUCCGGCUUAGCGUGCAAUU-----CAAUUAAAGUUGCAUAAGGCCAUCGG (((....(((.(((..(((.(((.(((........)))))).)))..))))))....(((((...((((((((-----.......)))))))).)))))..))) ( -32.00) >DroEre_CAF1 21317 99 + 1 CCAAUUCGGCGCAGUGCAUCGCCCAUGUCCUUGCCCAAGUCCAAGUCCUGGCCCUCCGGCUUAGCGUGCAAUU-----CAAUUAAAGUUGCAUAAGGCCAUCGG ((.....((((.((..(((.....)))..)))))).............(((((.....((...))((((((((-----.......))))))))..)))))..)) ( -23.90) >DroYak_CAF1 23808 104 + 1 CCAUUUUGGCACAGUGCAUCGACCAUGUCCUUGCCCAUGUCCAUGUACUGGCCCUCCGGCUUAGCGUGCAAUUCAAUUCAAUUAAAGUUGCAUAAGGCCAUCGG ((.....(((.((((((((.(((.(((........)))))).)))))))))))....(((((...((((((((............)))))))).)))))...)) ( -33.90) >consensus CCGUUUUGGCGCAGUGCAUCGACCAUGUCCUUGCCCAUGUCCAUGUCCUGGCCCUCCGGCUUAGCGUGCAAUU_____CAAUUAAAGUUGCAUAAGGCCAUCGG ((.....(((.(((.((((.(((.(((........)))))).)))).))))))....(((((...((((((((............)))))))).)))))...)) (-26.70 = -27.30 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:19 2006