Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,998,020 – 5,998,114 |
Length | 94 |
Max. P | 0.850863 |
Location | 5,998,020 – 5,998,114 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 77.01 |
Mean single sequence MFE | -20.67 |
Consensus MFE | -6.99 |
Energy contribution | -8.15 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.20 |
Mean z-score | -2.08 |
Structure conservation index | 0.34 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.850863 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5998020 94 + 22224390 G-AAAUGAAAAGGCGGCGA--GAA-----------AAUGCGGCAGUUAAAUUUCGCAAAUUGAGUCGAAUGAAUAACUAAGUGGGUGUAGAAUGCGACUGGAAAAUUG (-((((..((..((.(((.--...-----------..))).))..))..))))).....((.(((((........(((.....)))........))))).))...... ( -19.59) >DroPse_CAF1 15004 87 + 1 GAAAAUGAAGAGGCGGUGCCCAAA-----------AAUGUGGCCGUUGUA-CUUACAAAUUGAGCCAAAUGAAUAAGUAAGUGAACGGGGG--GC-------AGUUUU .........(((((..(((((...-----------.......(((((.((-(((((..(((.(......).)))..)))))))))))).))--))-------)))))) ( -21.10) >DroSec_CAF1 18182 94 + 1 G-AAAUGAAAAGGCGGCGA--GAA-----------AAUGCGGCAGUUAAAUUUCGCAAAUUGAGUCGAAUGAAUAACUAAGUGGGUGUAGAAUGCGACUGGAAAAUUG (-((((..((..((.(((.--...-----------..))).))..))..))))).....((.(((((........(((.....)))........))))).))...... ( -19.59) >DroSim_CAF1 14354 94 + 1 G-AAAUGAAAAGGCGGCGA--GAA-----------AAUGCGGCAGUUAAAUUUCGCAAAUUGAGUCGAAUGAAUAACUAAGUGGGUGUAGAAUGCGACUGGAAAAUUG (-((((..((..((.(((.--...-----------..))).))..))..))))).....((.(((((........(((.....)))........))))).))...... ( -19.59) >DroEre_CAF1 12862 100 + 1 --AAAUGGAAAGGCGGCGG--GAAAUGCGGCGGGAAAUGCGGCAGCG-AAUUUCGCAAAUUGAGUCGAAUGAAUAACUAAGUGGGUGUAGAGGGCGACUGGAAAU--- --.............(((.--.(..(((.(((.....))).)))...-..)..)))...((.(((((..(.....(((.....))).....)..))))).))...--- ( -23.50) >consensus G_AAAUGAAAAGGCGGCGA__GAA___________AAUGCGGCAGUUAAAUUUCGCAAAUUGAGUCGAAUGAAUAACUAAGUGGGUGUAGAAUGCGACUGGAAAAUUG .....................................(((((..........)))))..((.(((((........(((.....)))........))))).))...... ( -6.99 = -8.15 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:12 2006