| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,992,047 – 5,992,143 |
| Length | 96 |
| Max. P | 0.500000 |
| Location | 5,992,047 – 5,992,143 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 78.79 |
| Mean single sequence MFE | -22.60 |
| Consensus MFE | -14.86 |
| Energy contribution | -15.62 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.66 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5992047 96 - 22224390 GUGUGGGAAACCACAACGAAGCACUUUUUGGCACGUUAAUGUGUUAGAGGUCCUCA-CCUCACGCCAAAACACAAACACAAACACAGAC------ACAGACGC .(((((....)))))..........((((((((((....)))....(((((....)-))))..)))))))...................------........ ( -24.30) >DroPse_CAF1 8591 81 - 1 GUGCUUAAAACCACAACGAAGCACUUUUGGGCACGUUAAUGUGCUUUAG--CCUCAGCCUCAC------ACACAUGG----------ACAC----ACAUACAC ((((((((((...(......)...))))))))))(((.(((((.....(--(....)).....------.))))).)----------))..----........ ( -16.10) >DroSec_CAF1 7116 102 - 1 GUGUGGGUAACCACAACGAAGCACUUUUUGGCACGUUAAUGUGUUAGAGGUCCUCA-CCUCACGCCGAAACACAAACACAAACACAGACGCAGAGGCAGACGC .(((((....))))).....((...((((((((((....)))....(((((....)-))))..)))))))...................((....))....)) ( -23.20) >DroSim_CAF1 8447 90 - 1 GUGUGGGUAACCACAACGAAGCACUUUUUGGCACGUUAAUGUGUUAGAGGUCCUCA-CCUCACGCCGAAACACAAACACA------GAC------GCAGACGC .(((((....)))))..........((((((((((....)))....(((((....)-))))..)))))))..........------...------........ ( -21.00) >DroEre_CAF1 6966 102 - 1 GUGUGGGAAACCACAACGAAGCACUUUUUGGCACGUUAAUGUGUUAGAGGUCCUCA-CCUCACGGCGAAGCACAAACACAAACACAGACACAGACGCAGACGC .(((((....))))).((..((.(.....))).((((..((((((.(((((....)-))))...((...))...............))))))))))....)). ( -26.10) >DroYak_CAF1 9180 89 - 1 GUGUGGGAAACCACAACGCAGCACUUUUUGGCACGUUAAUGUGUUAGAGGUCCUUA-CCUCACAACGAAACACAAAC------------ACAGACGCACACG- .(((((....)))))..((.((.(.....)))..(((..((((((.(((((....)-)))).....(.....).)))------------)))))))).....- ( -24.90) >consensus GUGUGGGAAACCACAACGAAGCACUUUUUGGCACGUUAAUGUGUUAGAGGUCCUCA_CCUCACGCCGAAACACAAACACA______GACAC____GCAGACGC .(((((....))))).....((......(((((((....)))))))((((.......))))..................................))...... (-14.86 = -15.62 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:11 2006