| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,989,911 – 5,990,007 |
| Length | 96 |
| Max. P | 0.979005 |
| Location | 5,989,911 – 5,990,007 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 87.19 |
| Mean single sequence MFE | -17.52 |
| Consensus MFE | -15.25 |
| Energy contribution | -16.00 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.83 |
| SVM RNA-class probability | 0.979005 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5989911 96 + 22224390 GCGAACUCGCACACACAUAGACACACACACGCAAUACCUUUUGCAACUGCUGACAUUGUAGCAUGAAUUUUGCAACAGGCAGCUAAAAAAAAAAAA (((....)))....................((((......))))....((((...((((.(((.......))).)))).))))............. ( -20.20) >DroSec_CAF1 5035 91 + 1 GCGAACUCGCACACACAU--ACACACACACGCAAUACCUUUUGCAACUGCUGACAUUGUAGCAUGAAUUUUGCAACAGGCAGCUAAAAAAA--AA- (((....)))........--..........((((......))))....((((...((((.(((.......))).)))).))))........--..- ( -20.20) >DroEre_CAF1 4835 81 + 1 GCGAACUCACACA--------------CACGCCAUACCUUUUGCAACUGCUGACAUUGUAGCAUGAAUUUUGCAACAGGCAGCUAAAAAAAG-AAA (((..........--------------..))).....(((((......((((...((((.(((.......))).)))).))))....)))))-... ( -15.70) >DroYak_CAF1 7053 88 + 1 GCGAACUCACACACA------CAAACACACGCAAUACCUUUUGCAACUGCUGACAUUGUAGCAUGAAUUUUGCAACAGACAGCUACAAAAA--AAA ...............------.........((((......))))....((((...((((.(((.......))).)))).))))........--... ( -14.00) >consensus GCGAACUCACACACA______CACACACACGCAAUACCUUUUGCAACUGCUGACAUUGUAGCAUGAAUUUUGCAACAGGCAGCUAAAAAAA__AAA (((....)))....................((((......))))....((((...((((.(((.......))).)))).))))............. (-15.25 = -16.00 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:10 2006