Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,989,317 – 5,989,416 |
Length | 99 |
Max. P | 0.894310 |
Location | 5,989,317 – 5,989,416 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 81.91 |
Mean single sequence MFE | -33.05 |
Consensus MFE | -21.89 |
Energy contribution | -23.33 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.04 |
Mean z-score | -2.38 |
Structure conservation index | 0.66 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.894310 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5989317 99 + 22224390 GGCGUGGAGUGCUGUGGUGCGGAUGUGGCAGGCACAUCAAGUGGCUAAAUCGCAGCCAUCAUCGCGGCUUUUGGGCUAAAAAUAAUGCCACUCCACUCA .(.((((((((((((((((..((((((.....))))))..((((((.......))))))))))))))).....(((..........)))))))))).). ( -42.70) >DroSec_CAF1 4434 95 + 1 GGAGUGGAGGGCUGUGUUGCGGAUGUGG----CACAUCAAGUGGCUAAAUCGCAGCCAUCAUCGCGGCUUUCGGGCUAAAAAUAAUGCCAAUCCACUCA .(((((((((((((((.((..((((...----..))))..((((((.......)))))))).)))))))))).(((..........)))....))))). ( -36.70) >DroEre_CAF1 4252 79 + 1 ----------------GUGUGGAUGUGG----CACAUCAAGUGGCUAAAUCGCAGCCAUCAUCGCGGCUUUUGGGCUAAAAAUAAUGACAUUCCACUCA ----------------(.(((((.(((.----((.......(((((.......((((........))))....))))).......)).)))))))).). ( -19.74) >consensus GG_GUGGAG_GCUGUGGUGCGGAUGUGG____CACAUCAAGUGGCUAAAUCGCAGCCAUCAUCGCGGCUUUUGGGCUAAAAAUAAUGCCAAUCCACUCA ...(((((..........(((((((((.....))))))..((((((.......))))))...)))((((....))))..............)))))... (-21.89 = -23.33 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:09 2006