Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 778,026 – 778,219 |
Length | 193 |
Max. P | 0.681119 |
Location | 778,026 – 778,124 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 90.31 |
Mean single sequence MFE | -27.43 |
Consensus MFE | -24.46 |
Energy contribution | -23.90 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.12 |
Mean z-score | -1.32 |
Structure conservation index | 0.89 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.536947 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 778026 98 + 22224390 CGUGGACUGUGGCAAAGUUGUCAUGACUGGGAUACAAAUCCUUAUCGCUAUAAAUUAAUUGAAGCUGGCGUAAAGCGGUCGGCAUCAGUGACCAGCAA ..(((..((((((..((((.....))))(((((....)))))....)))))).....(((((.((((((........)))))).)))))..))).... ( -27.20) >DroSec_CAF1 93591 98 + 1 CGUGGACCGUGGCAAAGUUGUCAUGACUGGGAUACAAAUCCUUAUCGCUAUAAAUUAAUUGAAGCUGGCGUAAAGCGGUCGGUAUCAGUGACCAGCAA .......(((((((....))))))).((((((((........))))...........(((((.((((((........)))))).)))))..))))... ( -25.10) >DroSim_CAF1 54810 98 + 1 CGUGGACCGUGGCAAAGUUGUCAUGACUGGGAUACAAAUCCUUAUCGCUAUAAAUUAAUUGAAGCUGGCGUAAAGCGGUCGGCAUCAGUGACCAGCAA .......(((((((....))))))).((((((((........))))...........(((((.((((((........)))))).)))))..))))... ( -26.60) >DroYak_CAF1 94071 93 + 1 -----AUCCAGGUCCAGUUGUCCUGACUGGGAUACAAAUCCCUAUCGCUAUAAAUUAAUUGAAGCUGGCGUACAGCGGUCGGCUUCAAUGAGCAGCAA -----...........((((..(.((..(((((....)))))..))...........((((((((((((........)))))))))))))..)))).. ( -30.80) >consensus CGUGGACCGUGGCAAAGUUGUCAUGACUGGGAUACAAAUCCUUAUCGCUAUAAAUUAAUUGAAGCUGGCGUAAAGCGGUCGGCAUCAGUGACCAGCAA ................((((((..((..(((((....)))))..))...........(((((.((((((........)))))).))))))).)))).. (-24.46 = -23.90 + -0.56)
Location | 778,124 – 778,219 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 79.16 |
Mean single sequence MFE | -25.67 |
Consensus MFE | -14.57 |
Energy contribution | -15.38 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.12 |
Mean z-score | -1.85 |
Structure conservation index | 0.57 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.681119 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 778124 95 - 22224390 AAAGGGUUAACUGAAGUGAAUGUGGGCCUGCAAAAUGGACUGAAAUCAGGGUUAGCCCCGAAAUGGACUUUUGGAAUUUUUCAAAGUU-UUCUGCA ...(((((((((..............((........)).(((....)))))))))))).(....(((((((.(((....)))))))))-)....). ( -21.20) >DroSec_CAF1 93689 96 - 1 AAAGGGUUAACUGAAGUGAAUGUGGGCCUGGAAAAUGGACUGAAUUCAGGGUUAGGCCCGAAAUGGACUUUUGGAAUUUUUCAAAGUUUUUCUGCA ...(((..(((((((((..((.(((((((((....((((.....))))...)))))))))..))..)))))((((....)))).))))..)))... ( -23.40) >DroSim_CAF1 54908 96 - 1 AAAGGGUUAACUGAAGUGAAUGUCGGCCUGGAAAAUGGACUGAAUUCAGGGUUAGCCCCGAAAUGGACUUUUGGAAUUUUUCAAAGUUUUUCUGCA ...(((((((((....(((((.((((((........)).))))))))).))))))))).((((..((((((.(((....))))))))))))).... ( -26.40) >DroEre_CAF1 106498 91 - 1 AAAGGGUUAACUG-----AAUGUGGGCCUGGAAAAUGGUCUGAUUUCAGGGUUAGCCCCGAAAUGGACUUUGGGCAUUUUCCAAAGUUUUUCUGCG ...((((((((((-----((..((((((........))))))..)))..))))))))).((((..(((((((((.....))))))))))))).... ( -31.30) >DroYak_CAF1 94164 91 - 1 AAAGGGUUAACUG-----AAUGUGGGCCUGGAAAACGGGCCGAUUUCGGGGUUAGCCCCGAAAUGGACUUUUGGCAUUUUGCAAACUUUUUCUGCA ((((((((..(.(-----(((((.((((((.....)))))).(((((((((....))))))))).........)))))).)..))))))))..... ( -35.40) >DroPer_CAF1 167423 73 - 1 AAAGGGUUAACAGAAAGG-----------------------GGUUCCCGGGUUAGCCCCAAAAUUGACUUUUGGCAUUUUUCAAAGUUUUCUCUCU ...((((((((.....((-----------------------(...)))..)))))))).......((((((.((......))))))))........ ( -16.30) >consensus AAAGGGUUAACUGAAGUGAAUGUGGGCCUGGAAAAUGGACUGAAUUCAGGGUUAGCCCCGAAAUGGACUUUUGGAAUUUUUCAAAGUUUUUCUGCA ...(((((((((..............((........)).(((....)))))))))))).((((..((((((.((......)))))))))))).... (-14.57 = -15.38 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:19 2006