Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,983,921 – 5,984,029 |
Length | 108 |
Max. P | 0.970471 |
Location | 5,983,921 – 5,984,029 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 93.15 |
Mean single sequence MFE | -40.73 |
Consensus MFE | -36.91 |
Energy contribution | -37.47 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.06 |
Mean z-score | -2.98 |
Structure conservation index | 0.91 |
SVM decision value | 1.66 |
SVM RNA-class probability | 0.970471 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5983921 108 + 22224390 AUACAUGUUUAGUUGGGAUAAGGGUGGCAGAGUGGGCGGCAGUAACGCCCACUUAUGUCACUGACUGCUGCGACUGCGGCUGUCGUUGUCAUUUUGACUUUGUGCUGU ..(((.((..(((..((((...((((((((((((((((.......))))))))).)))))))(((.(((((....))))).)))......))))..)))....))))) ( -46.00) >DroSim_CAF1 617 105 + 1 AUACAUGUUUAGUUGGGAUAAGGGCGACAAAGUGGGCGGCUGUUACGCCCACUUAUAUCACUGACU---GCGACUGCGGCUGUCGUUGUCAUUUUGACUUUGUGCUGU ..(((.((..(((..((((.(.((((((((((((((((.......)))))))))..........((---((....)))).))))))).).))))..)))....))))) ( -38.50) >DroYak_CAF1 878 105 + 1 AUACAUGUUUAGCUGGGAUAAGGGUGGCAGAAUGGGCGGCAGUAACGCCCACUUAUGUCACUGACU---GCGACUGCGGCUGUCGUUGUCAUUUUGACUUUGUGCUGU ..............((.((((((((((((...((((((.......))))))....))))))((((.---(((((.......))))).))))......)))))).)).. ( -37.70) >consensus AUACAUGUUUAGUUGGGAUAAGGGUGGCAGAGUGGGCGGCAGUAACGCCCACUUAUGUCACUGACU___GCGACUGCGGCUGUCGUUGUCAUUUUGACUUUGUGCUGU ..............((.(((((((((((((((((((((.......))))))))).))))))((((....(((((.......))))).))))......)))))).)).. (-36.91 = -37.47 + 0.56)
Location | 5,983,921 – 5,984,029 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 93.15 |
Mean single sequence MFE | -29.70 |
Consensus MFE | -26.63 |
Energy contribution | -25.97 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.13 |
Mean z-score | -2.59 |
Structure conservation index | 0.90 |
SVM decision value | 1.22 |
SVM RNA-class probability | 0.932935 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5983921 108 - 22224390 ACAGCACAAAGUCAAAAUGACAACGACAGCCGCAGUCGCAGCAGUCAGUGACAUAAGUGGGCGUUACUGCCGCCCACUCUGCCACCCUUAUCCCAACUAAACAUGUAU .((((((...(((.....)))...(((.((.((....)).)).))).))).....((((((((.......)))))))))))........................... ( -28.20) >DroSim_CAF1 617 105 - 1 ACAGCACAAAGUCAAAAUGACAACGACAGCCGCAGUCGC---AGUCAGUGAUAUAAGUGGGCGUAACAGCCGCCCACUUUGUCGCCCUUAUCCCAACUAAACAUGUAU .....(((.........((((..((((.......)))).---.))))((((((.(((((((((.......)))))))))))))))..................))).. ( -31.20) >DroYak_CAF1 878 105 - 1 ACAGCACAAAGUCAAAAUGACAACGACAGCCGCAGUCGC---AGUCAGUGACAUAAGUGGGCGUUACUGCCGCCCAUUCUGCCACCCUUAUCCCAGCUAAACAUGUAU ..(((.....((((...((((..((((.......)))).---.)))).))))...((((((((.......)))))))).................))).......... ( -29.70) >consensus ACAGCACAAAGUCAAAAUGACAACGACAGCCGCAGUCGC___AGUCAGUGACAUAAGUGGGCGUUACUGCCGCCCACUCUGCCACCCUUAUCCCAACUAAACAUGUAU ...(((....((((...((((..((((.......)))).....)))).))))...((((((((.......)))))))).))).......................... (-26.63 = -25.97 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:03 2006