Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,982,678 – 5,982,784 |
Length | 106 |
Max. P | 0.553483 |
Location | 5,982,678 – 5,982,784 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.95 |
Mean single sequence MFE | -24.90 |
Consensus MFE | -23.52 |
Energy contribution | -23.24 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.11 |
Mean z-score | -1.16 |
Structure conservation index | 0.94 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.553483 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5982678 106 + 22224390 UGGGAAAGCAGCAGCCAGGCAGUUGUGAAAGACUCGUCUCAAAGUCUGGACUCGAUUUAGGUUUAGAUGACGCGGAGUAAAAAGUACAAAACCAA--------------AAACCAAAGCA (((....((....))..((...(((((....((((((.(((...((((((((.......))))))))))).)).))))......)))))..))..--------------...)))..... ( -22.30) >DroSec_CAF1 6861 106 + 1 UGGGAAAGCAGCAGCCAGGCAGUUGUGAAAGACUUAGCUCAAAGUCUGGACUCGAUUUAGGUUUAGAUGACGCGGAGUAAAAAGUACAAAACCAA--------------AAACCAAAGCA (((....((....))..((...(((((....((((.(((((...((((((((.......))))))))))).)).))))......)))))..))..--------------...)))..... ( -22.40) >DroSim_CAF1 19668 106 + 1 UGGGAAAGCAGCAGCCAGGCAGUUGUGAAAGACUCGGCUCAAAGUCUGGACUCGAUUUAGGUUUAGAUGACGCGGAGUAAAAAGUACAAAACCAA--------------AAACCAAAGCA (((....((....))..((...(((((....((((.(((((...((((((((.......))))))))))).)).))))......)))))..))..--------------...)))..... ( -26.00) >DroEre_CAF1 6845 120 + 1 UGGGAAAGCAGCAGCCAGGCAGUUGUGAAGGACUCGGCUGAAAGUCUGGACUCGAUUUAAGUUUAGAUGACGCGGAGUAAAAAAUACAAAGCCAAAAGCCAAAAACCAAAAACCAAAGCA (((....((....))..(((..(((((....((((.((.....(((((((((.......)))))))))...)).))))......))))).)))............)))............ ( -27.70) >DroYak_CAF1 16735 112 + 1 UGGGAAAGCAGCAGCCAGGCAGUUGUGAAGGACUCGGUUUAAAGUCUGGACUCGAUUUAGGUUUAGAUGACGCGGAGUAAAAAAUACAAAGCCAAAAACCA--------AAACCAAAGCA (((....((....))..(((..(((((....((((.((.(...(((((((((.......))))))))).).)).))))......))))).))).....)))--------........... ( -26.10) >consensus UGGGAAAGCAGCAGCCAGGCAGUUGUGAAAGACUCGGCUCAAAGUCUGGACUCGAUUUAGGUUUAGAUGACGCGGAGUAAAAAGUACAAAACCAA______________AAACCAAAGCA (((....((....))..((...(((((....((((.((.....(((((((((.......)))))))))...)).))))......)))))..))...................)))..... (-23.52 = -23.24 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:01 2006