Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,982,063 – 5,982,181 |
Length | 118 |
Max. P | 0.500000 |
Location | 5,982,063 – 5,982,181 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 92.97 |
Mean single sequence MFE | -26.52 |
Consensus MFE | -22.78 |
Energy contribution | -23.46 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.07 |
Mean z-score | -1.19 |
Structure conservation index | 0.86 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5982063 118 + 22224390 ACAGACGCAAACACAAUGCCAAUGAUAAAUGAUUGUUUUGGCCAAGUUUAAAAUCUUUUGUCCGUUGCCGACAAGAGAGCACUGUGACUGUCAGCCACUCAAAAAGGAUUCGAAUUUC ((((.((((........(((((.(((((....))))))))))...........(((((((((.......)))))))))....)))).))))........................... ( -23.20) >DroSec_CAF1 6276 111 + 1 ACAAACGCAAACACAAUGCCAAUGAUAAAUGAUUGUUUUGGCCAAGUUUAAAAUCUUUUGUCAGUUGCCGACGAGAGAGCACUGUGGCUCUCAGCCACUCAAAAAGGAUUC------- ......((((((.....(((((.(((((....))))))))))...))))....(((((((((.......)))))))))))...(((((.....))))).............------- ( -27.90) >DroSim_CAF1 19035 111 + 1 ACAGACGCAAACACAAUGCCAAUGAUAAAUGAUUGUUUUGGCCAAGUUUAAAAUCUUUUGUCAGUUGCCGACAAGAGAGCACUGUGGCUCUCAGCCACUCAAAAAGGAUUC------- ......((((((.....(((((.(((((....))))))))))...))))....(((((((((.......)))))))))))...(((((.....))))).............------- ( -28.20) >DroEre_CAF1 6231 111 + 1 ACAGACGCAAACACAAUGCCAAUGAUAAAUGAUUGUUUUGGCCAAGUUUAAAAUCUUUUGUCAGCUGCCGACGAGAGAGCACUGUGGCUCUCAGCCACUCAAAAAGGAUUC------- ......((((((.....(((((.(((((....))))))))))...))))....(((((((((.......)))))))))))...(((((.....))))).............------- ( -27.90) >DroYak_CAF1 16134 110 + 1 ACAGACGCAAACACAAUGCCAAUGAUAAAUGAUUGUUUUGGCCAAGUUUAAAAUCUUUUGUCAGUUGCCGACUGGAGAGCACUGUGGCUCUCAC-CCCUCAAAAAGGAUCG------- .(((.(((((..((((.(((((.(((((....)))))))))).(((........)))))))...))).)).)))((((((......))))))..-.(((.....)))....------- ( -25.40) >consensus ACAGACGCAAACACAAUGCCAAUGAUAAAUGAUUGUUUUGGCCAAGUUUAAAAUCUUUUGUCAGUUGCCGACAAGAGAGCACUGUGGCUCUCAGCCACUCAAAAAGGAUUC_______ ......((((((.....(((((.(((((....))))))))))...))))....(((((((((.......)))))))))))...(((((.....))))).................... (-22.78 = -23.46 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:00 2006