Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,981,635 – 5,981,747 |
Length | 112 |
Max. P | 0.678373 |
Location | 5,981,635 – 5,981,747 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 90.02 |
Mean single sequence MFE | -27.98 |
Consensus MFE | -23.32 |
Energy contribution | -23.20 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.09 |
Mean z-score | -1.43 |
Structure conservation index | 0.83 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678373 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5981635 112 - 22224390 UGCGGCUGACUUUUGCUUUGCAUAAUUAUCGUGCAACUGGCAAUUUGCAGUCGAGCGUAUUUUAACAUUUUUGAUUUGGUUUGGCAAGUCUGGGAAAUUGAAUUC--AAUAGUA-- ..((((((....(((((((((((.......))))))..)))))....))))))...(...(((((..(((..((((((......))))))..)))..)))))..)--.......-- ( -26.70) >DroSec_CAF1 5850 112 - 1 UGCGGCUGACUUUUGCUUUGCAUAAUUAUCGUGCAACUGGCAAUUUGCAGUCGAGCGUAUUUUAACAUUUUUGAUUUGGUUUAGCAAGUCUGGGAAAUUGAUUUC--AAUAGUA-- ..((((((....(((((((((((.......))))))..)))))....)))))).((...........(((..((((((......))))))..))).((((....)--))).)).-- ( -26.70) >DroSim_CAF1 18607 112 - 1 UGCGGCUGACUUUUGCUUUGCAUAAUUAUCGUGCAACUGGCAAUUUGCAGUCGAGCGUAUUUUAACAUUUUUGAUUUGGUUUAGCAAGACUGGGAAAUUGAAUUC--AAUAGUA-- ..((((((....(((((((((((.......))))))..)))))....)))))).............(((.((((((..((((..((....))..))))..)).))--)).))).-- ( -26.70) >DroEre_CAF1 5799 112 - 1 UGCGGCUGACUUUUGCUUUGCAUAAUUAUCGUGCAACUGGCAAUUUGCAGUCGACCGAAUAUUAAGA----UGAUUUGGUUUGAUGAGUCUGGGAAAUUUAAUUCCUACUAUUGAA ..((((((....(((((((((((.......))))))..)))))....))))))(((((((.......----..)))))))(..((.(((..(((((......))))))))))..). ( -30.20) >DroYak_CAF1 15698 108 - 1 UGCGGCUGACUUUUGCUUUGCAUAAUUAUCGUGCAACUGGCAAUUUGCAGUCGAGCGCAUUUCAACA----UGAUUUGUUUUGGCAAGUCUGCGAAAUUGAAUUC--AAUAGUA-- ..((((((....(((((((((((.......))))))..)))))....))))))..((((........----.(((((((....)))))))))))..((((....)--)))....-- ( -29.60) >consensus UGCGGCUGACUUUUGCUUUGCAUAAUUAUCGUGCAACUGGCAAUUUGCAGUCGAGCGUAUUUUAACAUUUUUGAUUUGGUUUGGCAAGUCUGGGAAAUUGAAUUC__AAUAGUA__ ..((((((....(((((((((((.......))))))..)))))....))))))...................((((((......)))))).......................... (-23.32 = -23.20 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:59 2006