Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,971,093 – 5,971,196 |
Length | 103 |
Max. P | 0.549161 |
Location | 5,971,093 – 5,971,196 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 94.82 |
Mean single sequence MFE | -20.39 |
Consensus MFE | -19.17 |
Energy contribution | -19.17 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.55 |
Structure conservation index | 0.94 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.549161 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5971093 103 + 22224390 UUCGGUGCUGACCGAAGUUGCGCUGCGCUCAUUCAUAAAUUAUGCUGGCAAUUUAAACAUAUUUUACAUAUUUUACUUAUUUAUCGUUCAGUACCUUGCCCAA ...((((((((.(((((((((.(.(((...............))).)))))))((((.((((.....))))))))........))).))))))))........ ( -20.56) >DroSim_CAF1 5177 103 + 1 UUCGGUGCUGACCGAAGUUGCGCUGCGCUCAUUCAUAAAUUAUGCUGGCAAUUUAAACAUAUUUUACAUAUUUUACUUAUUUAUCGUUCAGUACCUUGCCCAA ...((((((((.(((((((((.(.(((...............))).)))))))((((.((((.....))))))))........))).))))))))........ ( -20.56) >DroYak_CAF1 5169 97 + 1 UUCGGUGCUGACCGAAGUUGCGCUGCGCUCUUUUAUAAAUUAUGCUGGCAAUUUAAACAUAUU------AUUUUACUUAUUUAUCGUUCAGUACCUUGCCCAA ...((((((((.(((((((((.(.(((...............))).)))))))((((......------..))))........))).))))))))........ ( -20.06) >consensus UUCGGUGCUGACCGAAGUUGCGCUGCGCUCAUUCAUAAAUUAUGCUGGCAAUUUAAACAUAUUUUACAUAUUUUACUUAUUUAUCGUUCAGUACCUUGCCCAA ...((((((((.(((((((((.(.(((...............))).)))))))..............................))).))))))))........ (-19.17 = -19.17 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:56 2006