Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,969,657 – 5,969,777 |
Length | 120 |
Max. P | 0.922375 |
Location | 5,969,657 – 5,969,777 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.89 |
Mean single sequence MFE | -44.73 |
Consensus MFE | -43.87 |
Energy contribution | -43.87 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.15 |
Structure conservation index | 0.98 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922375 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5969657 120 + 22224390 AUCGCAGCGGGCCAGCGAUGUGUAGAAUGACUCUAGCGUACUCUGGCCCGUCGGCAAUGCCGCUGAAAAGGCCACAGAGAAUGCUAAGAGCUCUUGACAAGUCAUCGCAUCGUGUAUACC ........((....((((((((......(((((((((((.((((((((..(((((......)))))...))))..)))).))))).)))).)).(((....))).)))))))).....)) ( -43.50) >DroSim_CAF1 3792 120 + 1 AUCGCAGCGGGCCAGCGAUGUGUAGAAUGACUCUAGCGUACUCUGGCCCGUCGGCAAGGCCGCUGAAAAGGCCACAGAGAAUGCUAAGAGCUCUUGACAAGUCAUCGCAUCGUGUAUACC ........((....((((((((......(((((((((((.((((((((....)))..((((........)))).))))).))))).)))).)).(((....))).)))))))).....)) ( -44.80) >DroYak_CAF1 3794 120 + 1 AUCGCAGCGGGCCAGCGAUGUGUAGAAUGACUCUAGCGUACUCUGGCCGGUCGGCAAGGCCGCUGAAAAGGCCACAGAGAAUGCUAAGAGCUCUUGACAAGUCAUCGCAUCGUGUAUACC ........((....((((((((......(((((((((((.((((((((....)))..((((........)))).))))).))))).)))).)).(((....))).)))))))).....)) ( -45.90) >consensus AUCGCAGCGGGCCAGCGAUGUGUAGAAUGACUCUAGCGUACUCUGGCCCGUCGGCAAGGCCGCUGAAAAGGCCACAGAGAAUGCUAAGAGCUCUUGACAAGUCAUCGCAUCGUGUAUACC ........((....((((((((......(((((((((((.((((((((..(((((......)))))...))))..)))).))))).)))).)).(((....))).)))))))).....)) (-43.87 = -43.87 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:53 2006