Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,968,673 – 5,968,793 |
Length | 120 |
Max. P | 0.587381 |
Location | 5,968,673 – 5,968,793 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -42.00 |
Consensus MFE | -39.30 |
Energy contribution | -38.97 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.07 |
Mean z-score | -1.64 |
Structure conservation index | 0.94 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.587381 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5968673 120 + 22224390 UGUCCAUUGUGCGCAGCAUCACGAAUAGCUGGCGUCGCAGAUUGGGCAUAAACCGGACCAAUUUGAGGAUUCGCAGCAACCGGAAUGUCCGCAACACGGACAGUCCGGAGCCACCACCAC ........(((.((.............(((((.(((.((((((((............))))))))..))).).))))..(((((.((((((.....)))))).))))).)))))...... ( -42.50) >DroSim_CAF1 2815 120 + 1 UGUCCAUUGUGCGCAGCAUCACGAAUAGCUGGCGUCGCAGGUUGGGCAUAAACCGGACCAACUUGAGGAUUCGCAGCAACCGGAAUGUCCGCAACACGGACAGACCGGAGCCACCACCAC ........(((.((.............(((((.(((.((((((((............))))))))..))).).))))..((((..((((((.....))))))..)))).)))))...... ( -42.80) >DroYak_CAF1 2787 120 + 1 UGUCCAUAGUGCGCAGCAUCACGAAUAGCUGGCGCCGCAGGUUGGGCAUAAACCGGACCAACUUGAGGAUUCUCAGCAACCGGAAAGUCCGCAACACGGACAGACCGGAGCCACCACCAC ........(((.((.............(((((..((.((((((((............)))))))).))....)))))..((((...(((((.....)))))...)))).)))))...... ( -40.70) >consensus UGUCCAUUGUGCGCAGCAUCACGAAUAGCUGGCGUCGCAGGUUGGGCAUAAACCGGACCAACUUGAGGAUUCGCAGCAACCGGAAUGUCCGCAACACGGACAGACCGGAGCCACCACCAC ........(((.((.............(((((..((.((((((((............)))))))).))...).))))..((((..((((((.....))))))..)))).)))))...... (-39.30 = -38.97 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:52 2006