Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,964,512 – 5,964,603 |
Length | 91 |
Max. P | 0.644810 |
Location | 5,964,512 – 5,964,603 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 90.48 |
Mean single sequence MFE | -22.93 |
Consensus MFE | -17.99 |
Energy contribution | -18.10 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.29 |
Structure conservation index | 0.78 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.644810 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5964512 91 - 22224390 AAGCAUUUCGGUUCGAGUUUCUUGAGCUUCCAGCAUGCAAAAUAAUGUACAUAAUUGUAUAUACAUAUAACCGAGUGGAACUCUGUUUGCA ..((.....((((((((...))))))))....)).((((((...(((((((....)))))))..........(((.....)))..)))))) ( -20.90) >DroSec_CAF1 11050 91 - 1 AAGCAUUUCGGUUCGAGUUUCUUGAGCUUCCAGCAUGCAAUAUAAUGUACAUAUUUGUAUAUACAUAUAAACGAGUGGAACUGUGUUUGCA ..(((...((((((.(....((((.((.....))..........(((((((....))))))).........))))).))))))....))). ( -19.60) >DroYak_CAF1 11976 87 - 1 AAGCAUUUCAGUUCGAGUUGGUUGAGCUUCCAGCAUGCAAUAAAAUGUACAUAUAUGUAUAU----AUAACCGAGUGGAACUGUGUUUGCA ..(((...((((((.(.(((((((.((.....))..........(((((((....)))))))----.))))))).).))))))....))). ( -28.30) >consensus AAGCAUUUCGGUUCGAGUUUCUUGAGCUUCCAGCAUGCAAUAUAAUGUACAUAUUUGUAUAUACAUAUAACCGAGUGGAACUGUGUUUGCA ..(((...((((((.(.((..(((.((.....))..........(((((((....))))))).....)))..)).).))))))....))). (-17.99 = -18.10 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:47 2006