Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,961,669 – 5,961,768 |
Length | 99 |
Max. P | 0.652548 |
Location | 5,961,669 – 5,961,768 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 75.38 |
Mean single sequence MFE | -14.88 |
Consensus MFE | -7.68 |
Energy contribution | -7.04 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.33 |
Mean z-score | -1.79 |
Structure conservation index | 0.52 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.652548 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5961669 99 + 22224390 AACCAAGUUGAAACCAAAAGUAUAAGCACGCUAUAAGCA-AAGCCAAAAGUAAAUAAU--------UUAAGAG-AAGCAGCAAAGGCUCUUAGAUUACAUCAAAGAGCA--- ......((((.........((....))..((.....)).-..................--------.......-...))))....((((((.(((...))).)))))).--- ( -13.40) >DroSec_CAF1 7777 97 + 1 AACCAAGUUGAAAAUAAAAGUAUAAGCA--CUAUAAGCA-AAGCCAAAAGCAAAUAAU--------UUAAGAG-AAGCAGCAAAGGCUCUUAGAUUAAAUCAAAGAGCA--- ......((((...............((.--......)).-..((.....)).......--------.......-...))))....((((((.(((...))).)))))).--- ( -14.20) >DroEre_CAF1 13193 98 + 1 AACCAAGUUGAAACCAA-AAUAUAAGCACGCUAUAAGCA-AAGCUAAAAGCAAAUAAU--------UUAAGAG-AAGCAGCAAAGGCUCUUGGUUAAAAUCAAAGAGCA--- ......((((.......-...........((.....)).-..((.....)).......--------.......-...))))....(((((((((....))).)))))).--- ( -15.20) >DroWil_CAF1 10181 107 + 1 AACGAAACUUCAACACAAACUAAAAU---UCAAAAAUCAGAAGUGAAACAUAAAAACUUGGAAAAUUGAGCAGUAAGCAGC--UGGCUCUUUGGCUAAGACAAAGAGCAAAA .........................(---((((...((..((((...........)))).))...)))))((((.....))--))((((((((.......)))))))).... ( -18.90) >DroYak_CAF1 9184 98 + 1 AACCAAGUUAAACCCAA-UAUAUAAGCACGCUAUAAGCA-AAGUCAAAAGCAAAUAAU--------UUAAGAA-AAGCAGCAGAGGCUCUUGGAUUACAUCAAAGAGCA--- .................-.......((..((.....)).-.........((.......--------.......-..)).))....((((((.(((...))).)))))).--- ( -12.69) >consensus AACCAAGUUGAAACCAAAAAUAUAAGCACGCUAUAAGCA_AAGCCAAAAGCAAAUAAU________UUAAGAG_AAGCAGCAAAGGCUCUUAGAUUAAAUCAAAGAGCA___ ..........................................((.....))..................................((((((.(.......).)))))).... ( -7.68 = -7.04 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:46 2006