Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,956,905 – 5,957,025 |
Length | 120 |
Max. P | 0.619468 |
Location | 5,956,905 – 5,957,025 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.61 |
Mean single sequence MFE | -29.92 |
Consensus MFE | -26.72 |
Energy contribution | -26.58 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.12 |
Mean z-score | -1.23 |
Structure conservation index | 0.89 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.619468 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5956905 120 - 22224390 CCUACUUUACGUCCGGCUGGAAUAUCAUGGACGGAUCUUUGGUUACCAUUUCCAUAAUUGAUUUGUUAAUGUCCCUGAUUAGCGAAUCGAGUCCGAGGAUAUUUGGGAUUUUAAGGGUAA ..((((((........((.(((((((.((((((((....(((...)))..)))....(((((((((((((.......))))))))))))))))))..))))))).))......)))))). ( -34.44) >DroVir_CAF1 15470 120 - 1 CAUAUUUCACAUCCGGCUGGAAUAUAAUGGAUGGAUCUUUGGUUACAAUUUCGAUAAUUGAUUUGUUAAUGUCAUUGAUUAGCGAAUCGAGCCCGAGGAUAUUUGGGAUUUUAAGGGUAA .........((((((............)))))).((((((((...............(((((((((((((.......))))))))))))).((((((....))))))...)))))))).. ( -28.70) >DroPse_CAF1 4690 120 - 1 CGUACUUCACAUCCGGUUGGAACAUCAUGGACGGAUCUUUGGUUACCAUUUCCAUAAUUGAUUUGUUAAUGUCAUUGAUUAGCGAAUCGAGCCCGAGGAUAUUUGGGAUUUUAAGGGUAA ..........((((((.(((...((((.(((....))).))))..)))...))....(((((((((((((.......))))))))))))).((((((....)))))).......)))).. ( -29.70) >DroGri_CAF1 14900 120 - 1 CAUAUUUCACAUCCGGCUGGAAUAUAAUGGAUGGAUCUUUGGUUACAAUUUCGAUAGUUGAUUUGUUAAUGUCAUUGAUUAGCGAAUCGAGCCCCAGGAUAUUUGGGAUUUUAAGGGUAA ..........((((..((.((((((..(((((.((...(((....)))..)).))..(((((((((((((.......)))))))))))))...)))..)))))).)).......)))).. ( -28.00) >DroWil_CAF1 4009 120 - 1 CAUAUUUUACAUCCGGUUGGAAUAUCAUGGACGGAUCUUUGGUUACCAUUUCGAUAAUUGAUUUGUUAAUGUCAUUGAUUAGCGAAUCGAGUCCAAGGAUAUUUGGGAUUUUAAGGGUAA ..........((((..((.(((((((.((((((((....(((...))).))).....(((((((((((((.......))))))))))))))))))..))))))).)).......)))).. ( -30.00) >DroMoj_CAF1 16698 120 - 1 CAUAUUUCACAUCCGGCUGGAAUAUAAUGGAUGGAUCUUUGGUUACAAUUUCGAUAAUUGAUUUGUUAAUGUCAUUGAUUAGCGAGUCGAGCCCGAGGAUAUUUGGGAUUUUAAGGGUAA .........((((((............)))))).((((((((...............(((((((((((((.......))))))))))))).((((((....))))))...)))))))).. ( -28.70) >consensus CAUAUUUCACAUCCGGCUGGAAUAUAAUGGACGGAUCUUUGGUUACAAUUUCGAUAAUUGAUUUGUUAAUGUCAUUGAUUAGCGAAUCGAGCCCGAGGAUAUUUGGGAUUUUAAGGGUAA .........((((((............)))))).((((((((...............(((((((((((((.......))))))))))))).((((((....))))))...)))))))).. (-26.72 = -26.58 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:42 2006