Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,955,238 – 5,955,335 |
Length | 97 |
Max. P | 0.962715 |
Location | 5,955,238 – 5,955,335 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 77.96 |
Mean single sequence MFE | -34.08 |
Consensus MFE | -26.53 |
Energy contribution | -26.95 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.38 |
Mean z-score | -2.07 |
Structure conservation index | 0.78 |
SVM decision value | 1.54 |
SVM RNA-class probability | 0.962715 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5955238 97 - 22224390 GCGUCCGCUGGCUGAAGCCAGCGAAGCAAGCAGUGUCUCGCGAGAGACGC--CGCCGAUAAACAAGUAUAGCCGAUGCACCAACC-ACAACCACUCUUCU ((((((((((((....)))))))......((.(((((((....)))))))--.))..................))))).......-.............. ( -37.10) >DroPse_CAF1 2902 81 - 1 GCGUGU--UUCGCGAAG--AGCGAUAUAAGCAGUGC-----AAGCAGUGCAUAUUCGUUAUAUAAAUA---CCUAUUGAACAUCCCCCUACUA------- (((...--..)))....--(((((.(((.(((.((.-----...)).))).)))))))).........---......................------- ( -15.10) >DroSec_CAF1 1440 97 - 1 GCGUCCGCUGGCUGAAGCCAGCGAAGCAAGCAGUGUCUCGCGAGAGGCGC--CGCCGAUAAACAAGUGUAGCCGAUGCACCAACC-ACAACCACUCUUCU ((((((((((((....)))))))..((..((.(((((((....)))))))--.))......((....)).)).))))).......-.............. ( -37.10) >DroSim_CAF1 1854 97 - 1 GCGUCCGCUGGCUGAAGCCAGCGAAGCAAGCAGUGUCUCGCGAGAGGCGC--CGCCGAUAAACAAGUGUAGCCGAUGCACCAACC-ACAACCACUGUUCU ((((((((((((....)))))))..((..((.(((((((....)))))))--.))......((....)).)).))))).......-.............. ( -37.10) >DroEre_CAF1 6705 97 - 1 GCGUCCGCUGGCGGCAGCCGGCGAAGCAAGCAGUGCCUCGCAAGAGGCGC--CGCCGAUAAAGCAGUGUAGCCGAUGCACCAACC-ACAACCACUCUUCU ((((((((((((....)))))))......((.(((((((....)))))))--.)).......((......)).))))).......-.............. ( -39.60) >DroYak_CAF1 2688 97 - 1 GCGUCCGUUGGCUGAAGCCGGCGCAGCAAGCAGUGCCUCGGAAGAGGCGC--CGCCGAUAAAGCAGUGUAGCCGAUGCACCAACC-ACAACCACUCUUCU (((((.((((((((....((((((.....)).(((((((....)))))))--.))))......)))).)))).))))).......-.............. ( -38.50) >consensus GCGUCCGCUGGCUGAAGCCAGCGAAGCAAGCAGUGCCUCGCAAGAGGCGC__CGCCGAUAAACAAGUGUAGCCGAUGCACCAACC_ACAACCACUCUUCU ((((((((((((....)))))))......((.(((((((....)))))))...))..................)))))...................... (-26.53 = -26.95 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:39 2006